Locus 1117

Sequence ID X_DroMel_CAF1
Location 3,283,588 – 3,283,707
Length 119
Max. P 0.812367
window1800

overview

Window 0

Location 3,283,588 – 3,283,707
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.85
Mean single sequence MFE -30.15
Consensus MFE -24.40
Energy contribution -24.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.80
Structure conservation index 0.81
SVM decision value 0.65
SVM RNA-class probability 0.812367
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3283588 119 + 22224390
AAUAUAUGUAUAUAUAUAUAGGUUCUACCGAGAUUUGAACUCGGAUCGCUGGAUUCAAAGUCCAGAGUGCUAACCGUUACACCAUAGAACCGGAUAAAUGCGCUGC-UGCAAAAUUCCAG
..(((((((....)))))))((((((((((((.......)))))....((((((.....))))))...................)))))))(((....((((....-))))....))).. ( -33.30)
>DroVir_CAF1 126854 108 + 1
----AAGGU-------UCAAGGUUCUACCGAGAUUUGAACUCGGAUCGCUGGAUUCAAAGUCCAGAGUGCUAACCAUUACACCAUAGAACCAGCUGUUAGCUUCGCGUCCAAAACU-CAG
----..(((-------(((((.(((....))).)))))))).(((.((((((((.....)))))(((.((((((.....................)))))))))))))))......-... ( -28.20)
>DroSim_CAF1 28952 112 + 1
AAUCCACUU-------GGUAGGUUCUACCGAGAUUUGAACUCGGAUCGCUGGAUUCAAAGUCCAGAGUGCUAACCGUUACACCAUAGAACCGGAUAAAUGCGCUGU-UGCAAAAUUCCAG
...((....-------))..((((((((((((.......)))))....((((((.....))))))...................)))))))(((....((((....-))))....))).. ( -30.80)
>DroEre_CAF1 55617 105 + 1
-------UG-------AAUAGGUUCUACCGAGAUUUGAACUCGGAUCGCUGGAUUCAAAGUCCAGAGUGCUAACCAUUACACCAUAGAACCGGAUAAAUGCGCUGC-UGCAAAAUUCCAG
-------..-------....((((((((((((.......)))))....((((((.....))))))...................)))))))(((....((((....-))))....))).. ( -30.60)
>DroYak_CAF1 55350 112 + 1
AUCCGACGG-------ACCAGGUUCUACCGAGAUUUGAACUCGGAUCGCUGGAUUCAAAGUCCAGAGUGCUAACCAUUACACCAUAGAACCGGAUAAAAGCGCUGC-UGUAAAAUUCCAG
.......((-------(((.((((((((((((.......)))))....((((((.....))))))...................))))))))).....(((...))-).......))).. ( -29.60)
>DroMoj_CAF1 137484 112 + 1
AAAACACGC-------UGAAGGUUCUACCGAGAUUUGAACUCGGAUCGCUGGAUUCAAAGUCCAGAGUGCUAACCAUUACACCAUAGAACCAGUCGAGUACCAAUCGUCCAGAACU-CAC
........(-------((..((((((((((((.......)))))....((((((.....))))))...................))))))).(.(((.......))).))))....-... ( -28.40)
>consensus
AA__CACGU_______UAUAGGUUCUACCGAGAUUUGAACUCGGAUCGCUGGAUUCAAAGUCCAGAGUGCUAACCAUUACACCAUAGAACCGGAUAAAUGCGCUGC_UGCAAAAUUCCAG
....................((((((((((((.......)))))....((((((.....))))))...................)))))))............................. (-24.40 = -24.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:49 2006