| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,250,181 – 3,250,272 |
| Length | 91 |
| Max. P | 0.945943 |
| Location | 3,250,181 – 3,250,272 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 79.18 |
| Mean single sequence MFE | -14.24 |
| Consensus MFE | -13.52 |
| Energy contribution | -12.64 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.21 |
| Mean z-score | -0.62 |
| Structure conservation index | 0.95 |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.945943 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3250181 91 + 22224390 -----------------AUGUCAACCCUUACUUAACCCCUAAAACUACCUGUUCGAGUUU-UUUCUUUUUUUUUUUUUUGGGUGUGUACUCGCAUAUUUGCAGGUGUUU -----------------........................((((.((((((..(((...-.)))..............((((((((....)))))))))))))))))) ( -14.00) >DroSec_CAF1 19742 100 + 1 CCCUUUCUAUAUGCUAUAUGUCAACCCU----UAACCCCUAAAACUACCUGUCCAAAUGUGUUUCUU-----CUUUUUUGGGUGUGUACUCGCGUAUUUGCAGGUGUUU ............................----.........((((.(((((((((((...(......-----)...)))))(((......)))......)))))))))) ( -14.60) >DroSim_CAF1 1298 99 + 1 CCCUUUCUAUAUGCUAUAUGUCAACCCU----UAACCCCUAAAACUACCUGUCCAAAUUU-UUUCUU-----UUUUUUUGGGUGUGUACUCGCGUAUUUGCAGGUGUUU ............................----.........((((.(((((((((((...-......-----....)))))(((......)))......)))))))))) ( -14.12) >consensus CCCUUUCUAUAUGCUAUAUGUCAACCCU____UAACCCCUAAAACUACCUGUCCAAAUUU_UUUCUU_____UUUUUUUGGGUGUGUACUCGCGUAUUUGCAGGUGUUU .........................................((((.(((((((((((...................))))).((((....)))).....)))))))))) (-13.52 = -12.64 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:34 2006