Locus 1099

Sequence ID X_DroMel_CAF1
Location 3,231,429 – 3,231,526
Length 97
Max. P 0.599868
window1780

overview

Window 0

Location 3,231,429 – 3,231,526
Length 97
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 76.93
Mean single sequence MFE -31.73
Consensus MFE -20.75
Energy contribution -21.59
Covariance contribution 0.84
Combinations/Pair 1.38
Mean z-score -1.52
Structure conservation index 0.65
SVM decision value 0.13
SVM RNA-class probability 0.599868
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3231429 97 + 22224390
UAGAGAGCGGAAA---CAGUGCAGCCUCGUCGUACAGCGAAACCGGUGCCGUAUCCCUGGCGAUGGUUUCCGGCUCUACGAAUCUCUACAGCGCGUAUCA
..((..(((....---).((((.......(((((.((((((((((.(((((......))))).)))))))..))).))))).........)))))).)). ( -32.19)
>DroSec_CAF1 201 97 + 1
UGGAGAGCGCAGA---CAGUGCAGCCUCAUCGUACAGCGAAACCGGUGCCGUAUCCCUGGCCAUGGUUUCCGGCACUUCGAAUCUCUACAGCGCGUAUCA
..((..((((.((---.(((((.((...........))(((((((..((((......))))..)))))))..)))))))(.....)....))))...)). ( -29.20)
>DroEre_CAF1 7838 100 + 1
UGGAAACCGGAAACAACAGUGCAGCCUCAUCGUACAGCGAAACCAGUGCCGUGUCCUUGGCCCUGGUUUCCGGCUCUACGAAUCUCUACAGCGCGUAUCA
..((.((.(....)....((((.......(((((.(((((((((((.((((......)))).))))))))..))).))))).........)))))).)). ( -33.89)
>DroYak_CAF1 7754 100 + 1
UGGAAACCGGAAACAACAGUGCAGCCUCGUCGUACAGCGAAACUAGUGCCGUAUCCCUGGCCCUGGUUUCCGGCUGUACGAAUCUCUACAGCGCGUAUCA
..((.((.(....)....((((.......(((((((((((((((((.((((......)))).))))))))..))))))))).........)))))).)). ( -37.89)
>DroAna_CAF1 12876 100 + 1
UGAAUAAUGGUGGUAAUAGUGCCGCCUCAUCGUUCUCCGAUACCAUUUCUAUGCCACUGGCAGCGGUAUCCAAUUCACAGAAUCCCUACGAUCUGAAACA
(((((...(((((((....)))))))............((((((.......((((...))))..))))))..)))))((((.((.....))))))..... ( -25.50)
>consensus
UGGAAACCGGAAA_AACAGUGCAGCCUCAUCGUACAGCGAAACCAGUGCCGUAUCCCUGGCCAUGGUUUCCGGCUCUACGAAUCUCUACAGCGCGUAUCA
..................((((.......(((((.(((((((((((.((((......)))).))))))))..))).))))).........))))...... (-20.75 = -21.59 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:30 2006