Locus 1079

Sequence ID X_DroMel_CAF1
Location 3,188,989 – 3,189,079
Length 90
Max. P 0.652143
window1750

overview

Window 0

Location 3,188,989 – 3,189,079
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 92.21
Mean single sequence MFE -18.21
Consensus MFE -13.88
Energy contribution -14.08
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.73
Structure conservation index 0.76
SVM decision value 0.25
SVM RNA-class probability 0.652143
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3188989 90 - 22224390
GUGUUAUUUAUUUUGUUUGUUGUCAUUGUGGUCGCUGCUUUUGAUUAAUUAAAGUGUGAGACGACAACAAAAAAAAAACACAAACACCAA
(((((.(((.(((((((.((((((.......((((.(((((.........)))))))))))))))))))))).))))))))......... ( -21.61)
>DroSec_CAF1 4372 77 - 1
GUGUUA----UUUUGUUUGUUGUCAUUGUGGUCGCUGCUUUUGAUUAAUUAAAGUGUGAGACGACAA-------AAAA--CACACACCAA
(((((.----.....(((((((((.......((((.(((((.........)))))))))))))))))-------).))--)))....... ( -17.11)
>DroSim_CAF1 4453 76 - 1
GUGUUA----UUUUGUUUGUUGUCAUUGUGGUCGCUGCUUUUGAU-AAUUAAAGUGUGAGACGACAA-------AAAA--CACACACCAA
(((((.----.....(((((((((.......((((.(((((....-....)))))))))))))))))-------).))--)))....... ( -17.91)
>DroEre_CAF1 3207 77 - 1
GUGUUA----UUUGGUUUGUUGUCAUUGUGGUCGCUGCUUUUGAUUAAUUAAAGUGUGAGACGACAA-------AAAA--CACACACCAA
......----.(((((.(((.((..((((.(((.(((((((.........)))))).).))).))))-------...)--)))).))))) ( -17.30)
>DroYak_CAF1 3165 77 - 1
GUGUUA----UUUUGUUUGUUGUCAUUGUGGUCGCUGCUUUUGAUUAAUUAAAGUGUGAGACGACAA-------AAAA--CACACACCAA
(((((.----.....(((((((((.......((((.(((((.........)))))))))))))))))-------).))--)))....... ( -17.11)
>consensus
GUGUUA____UUUUGUUUGUUGUCAUUGUGGUCGCUGCUUUUGAUUAAUUAAAGUGUGAGACGACAA_______AAAA__CACACACCAA
((((............((((((((.......((((.(((((.........)))))))))))))))))..............))))..... (-13.88 = -14.08 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:03 2006