| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,174,518 – 3,174,613 |
| Length | 95 |
| Max. P | 0.537773 |
| Location | 3,174,518 – 3,174,613 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 72.66 |
| Mean single sequence MFE | -29.84 |
| Consensus MFE | -19.86 |
| Energy contribution | -20.42 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.537773 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3174518 95 - 22224390 AAAG----CGGG-AG-----UG-------GCGGACG--AACAGGAAG-----UGGCAGGAUGGAGGAGUCGGGCGAAACGGAAGUCUGCCCGACGGCAGCUCUCUUCAUGUGCCUAAUU ...(----(...-.)-----)(-------(((.(.(--(..((..((-----(.((...........((((((((..((....)).)))))))).)).)))..)))).).))))..... ( -31.30) >DroSec_CAF1 131868 95 - 1 CAAG----CGGG-AG-----GG-----GGGAGGACG--AACAGGAAG-----UGGCAGGAUGGAGGAGUCGGGUGAAACGGAAGUGUGCCCGACGGCAGCU--CUUCAUGUGCCUAAUU ....----....-..-----..-----.........--.........-----.((((.(.((((((.(((((((...((....))..))))))).....).--)))))).))))..... ( -28.00) >DroEre_CAF1 139704 97 - 1 AAAG----CGGCGAAA---GUAGGGGGGGAAGG--------CGGAAG-----UGGUAGGUUGGAGGAGUCGGGAGAAACGGAAGUGUGCCCGACGGCAGCU--CUUCAUGUGCCUAAUU ....----..((....---)).........(((--------((...(-----(((..(((((.....((((((....((....))...))))))..)))))--..)))).))))).... ( -33.10) >DroYak_CAF1 140325 105 - 1 AAAC----CGGG-AGAAUAGAAGGGAGAGCAGGACG--AACAGGAAG-----UGGUAGGGUGGAGGAGUCGGGAGAAACGGAAGUGUGCCCGACGGCAGCU--CUUCAUGUGCCUAAUU ....----.(((-...(((....(((((((...((.--.((.....)-----).))...........((((((....((....))...))))))....)))--)))).))).))).... ( -30.80) >DroAna_CAF1 174011 112 - 1 GAAUUAGACAGG-AAGAGGGCAGGGGGUG-AGGGCGUAAAAAGGGACUAGGGAGGCAGGG-GGGGGAGU--GGCAGAACGGAAGCAUGCCCGACGGCAGCU--CUUCAUGCGCCUAAUU ............-................-.(((((((..(((((.((....))((.(..-(((.(.((--..(......)..)).).)))..).))..))--)))..))))))).... ( -26.00) >consensus AAAG____CGGG_AG____GUAGGG_GGGGAGGACG__AACAGGAAG_____UGGCAGGAUGGAGGAGUCGGGAGAAACGGAAGUGUGCCCGACGGCAGCU__CUUCAUGUGCCUAAUU .....................................................((((.(.(((((..((((((((...(....)..))))))))(....)...)))))).))))..... (-19.86 = -20.42 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:00 2006