| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,147,919 – 3,148,020 |
| Length | 101 |
| Max. P | 0.724566 |
| Location | 3,147,919 – 3,148,020 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.56 |
| Mean single sequence MFE | -41.27 |
| Consensus MFE | -28.41 |
| Energy contribution | -28.22 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.724566 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3147919 101 + 22224390 -------------CGGCAGCAGCG------GCAAUACUUCCACGUCGACGUGGUGCGGCAGCAUCAACUUCCUGGUGUAUAUGGUGUGCUCGUUUUGCUGCUGUUGCUACAACUUUCGCA -------------.((((((((((------((((.((...((((....))))(..((.((((((((......))))))...)).))..)..)).))))))))))))))............ ( -42.00) >DroSec_CAF1 105625 101 + 1 -------------CGGCAGCAGCG------GCAAUACAUCCACGUCGACGUGGUGCGGCAGCAUCAACUUCCUGGUGUAUAUGGUGUGCUCGUUUUGCUGCUGUUGCUACAACUUUCGCA -------------.((((((((((------((((.((...((((....))))(..((.((((((((......))))))...)).))..)..)).))))))))))))))............ ( -42.50) >DroEre_CAF1 112047 114 + 1 GCAUCGGCGUCAGCGGCAGCAGCG------GUAAUACUUCGACGUCGACGUGGUGCGGCAGCAUCAAUUUCCUGGUGUAUAUGGUGUGCUCGUUUUGCUGCUGUUGCUACAACUUCCGCA ......(((..((.((((((((((------((((.((.(((....)))...((..((.((((((((......))))))...)).))..)).)).))))))))))))))....))..))). ( -41.80) >DroYak_CAF1 113305 114 + 1 GCAUCGGCGUCAGCGGCAGCAGCG------GUAAUACUUCGACGUCGACGUGGUGCGGCAGCAUCAACUUCCUGGUGUAUAUGGUGUGCUCGUUUUGCUGCUGUUGCUACAACUUCCGAA ...((((.....(..(((((((((------((((.((.(((....)))...((..((.((((((((......))))))...)).))..)).)).)))))))))))))..).....)))). ( -42.80) >DroAna_CAF1 138474 120 + 1 GCAGCGGCGUCGGCAGCAGCAGCGGCGCUGGUAAUACUUCGACGUCGACGUGGUGCGGCAGCAUCAAUUUUUUGGUGUAUAUGGUGUGCUCGUUCUGCUGUUGCUGCUAUAAUUUUCGUA ((....))...((((((((((((((.((.((((.((((...((..(((..((((((....)))))).....)))..))....)))))))).)).))))))))))))))............ ( -47.70) >DroPer_CAF1 139273 105 + 1 CCAC---------CGGAGCUACCG------GCAAUACCUCAACGUCGACGUGGUGCGGCAGCAUCAAUUUUCUUGUGUAUAUGGUGUGCUCCUUCUGCUGUUGUUGCUACAAUUUUCGGA ....---------.((((((((((------...((((..(((.(......((((((....)))))).....)))).)))).))))).))))).((((..(((((....)))))...)))) ( -30.80) >consensus GCA__________CGGCAGCAGCG______GCAAUACUUCGACGUCGACGUGGUGCGGCAGCAUCAACUUCCUGGUGUAUAUGGUGUGCUCGUUUUGCUGCUGUUGCUACAACUUUCGCA .............(((((((((((......(((.((((...((..((...((((((....))))))......))..))....)))))))......))))))))))).............. (-28.41 = -28.22 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:55 2006