Locus 1060

Sequence ID X_DroMel_CAF1
Location 3,101,931 – 3,102,031
Length 100
Max. P 0.755888
window1722

overview

Window 2

Location 3,101,931 – 3,102,031
Length 100
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 94.66
Mean single sequence MFE -34.34
Consensus MFE -29.90
Energy contribution -29.78
Covariance contribution -0.12
Combinations/Pair 1.03
Mean z-score -1.36
Structure conservation index 0.87
SVM decision value 0.49
SVM RNA-class probability 0.755888
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3101931 100 - 22224390
UGGCAGGGAUU---UGUCGAGGGAUUGCUGCCGCUGUACAGGGUGACCUGGCUAAGGAUAUUGCCGCUGCUGGGCACAAAAUGUGGUUGUGAUUGCAAGAGUG
.(((((.((((---(......))))).)))))(((.((((..(((.((..((...((......))...))..)))))....)))).((((....)))).))). ( -33.00)
>DroSec_CAF1 61532 103 - 1
UGGCAGGGAUUUUCUGUAGAGGGAUUGCUGCCGCUGUACAGGGUGACCUGGCUGAGGAUGUUGCCGCUGCUGGGCACAAAAUGUGGUUGUGAUUGCAAGAGUG
.(((((.(((((((....)).))))).)))))(((.((((..(((.((..((...((......))...))..)))))....)))).((((....)))).))). ( -33.40)
>DroSim_CAF1 61808 100 - 1
UGGCAGGGAUU---CGUCGAGGGAUUGCUGCCGCUGUACAGGGUGACCUGGCUGAGGAUGUUGCCGCUGCUGGGCACAAAAUGUGGUUGUGAUUGCAAGAGUG
.(((((.((((---(......))))).)))))(((.((((..(((.((..((...((......))...))..)))))....)))).((((....)))).))). ( -35.30)
>DroEre_CAF1 61308 100 - 1
UGGCAGGGAUU---CGUGGAGGGAUUGCUGCCGCUGUAGAGGGUGACCUGGCUGAGGAUGUUGCCGCUGCUGGGCACAAAAUUUGGUUGUGUUUGCAAGAGUG
.(((((.((((---(......))))).)))))((.(((((((....)))(((..........))).)))).((((((((.......))))))))))....... ( -35.80)
>DroYak_CAF1 66293 100 - 1
GGGCAGGGAUU---CGUAGAGGGAUUGCUGCCGCUGUACAGGGUGACCUGGCUGAGGAUGUUGCCGCUACUGGGCACAAAAUGUGGUUGUGAUUGCAAGAGUG
.(((((.((((---(......))))).)))))(((.(.((((....))))(((.((...((....))..)).)))......((..((....))..))).))). ( -34.20)
>consensus
UGGCAGGGAUU___CGUAGAGGGAUUGCUGCCGCUGUACAGGGUGACCUGGCUGAGGAUGUUGCCGCUGCUGGGCACAAAAUGUGGUUGUGAUUGCAAGAGUG
.(((((.((((...........)))).)))))(((.((((..(((.((..((...((......))...))..)))))....)))).((((....)))).))). (-29.90 = -29.78 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:37 2006