Locus 1046

Sequence ID X_DroMel_CAF1
Location 3,032,675 – 3,032,776
Length 101
Max. P 0.928509
window1703

overview

Window 3

Location 3,032,675 – 3,032,776
Length 101
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.49
Mean single sequence MFE -37.80
Consensus MFE -27.09
Energy contribution -27.82
Covariance contribution 0.72
Combinations/Pair 1.20
Mean z-score -2.86
Structure conservation index 0.72
SVM decision value 1.19
SVM RNA-class probability 0.928509
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3032675 101 - 22224390
CAAAAAAUAAA-ACAAA---------ACUU------AAAUCGCGGCAUUAGCGCGUGCGAGCGAGAUGGCGCGUUGGCACGCGUGUUUACCGUUGGAC---GCGUGUGCCGCUAUUACCG
...........-.....---------....------......(((...((((((((((.(......).)))))).((((((((((((((....)))))---)))))))))))))...))) ( -39.40)
>DroSec_CAF1 12729 101 - 1
CAAAAAAUAAA-ACAAA---------ACUU------AAAUCGCGGCAUUAGCGCGUGCGAGCGAGAUGGCGCGUUGGCACGCGUGUUUACCGUUGGAC---GCGUGUGCCGCUAUUACCG
...........-.....---------....------......(((...((((((((((.(......).)))))).((((((((((((((....)))))---)))))))))))))...))) ( -39.40)
>DroSim_CAF1 7715 101 - 1
CAAAAAAUAAA-ACAAA---------ACUU------AAAUCGCGGCAUACGCGCGUGCGAGCGAGAUGGCGCGUUGGCACGCGUGUUUACCGUUGGAC---GCGUGUGCCGCUAUUACCG
...........-.....---------....------.....(((((((((((((((((.((((.(....).)))).))))))..(((((....)))))---)))))))))))........ ( -43.00)
>DroEre_CAF1 12746 101 - 1
CAAAAAAUAAA-ACAAA---------ACUU------AAAUCGCGGCAUUAGCGCGUGCGAGCGAGAUGGCGCGUAGGCACGCGUGUUUACCGUUGAAC---GCGUGUGCCGCUAUUACCG
...........-.....---------....------......(((...((((((((((.(......).)))))).((((((((((((((....)))))---)))))))))))))...))) ( -40.60)
>DroYak_CAF1 13159 109 - 1
CAAAAAAUAAA-ACAAAACUUCA-AAACUU------AAAUCGCGGCAUUAGCGCGUGCGAGCGAGAUGGCGCGUUUGCACGCGUGUUUACAGUUGGAC---GCGUAUGCCGCUAUUACCG
...........-...........-......------.....(((((((..(((((((((((((.(....).)))))))))))(((((((....)))))---)))))))))))........ ( -38.30)
>DroAna_CAF1 6024 111 - 1
CAAAAAAAAAGUAUAAGAUUUAUGAAAUUUAUUAUGAAGACGCGGCUUUGUGGCGUGCGAGCGAGAUGGC--GAUGCCGCGUAUGUUUACCGUUAGACCGUACGAACGCC-------CCG
..................(((((((......)))))))..((.(((...(((((((((.(......).))--.)))))))(((((((((....)))).)))))....)))-------.)) ( -26.10)
>consensus
CAAAAAAUAAA_ACAAA_________ACUU______AAAUCGCGGCAUUAGCGCGUGCGAGCGAGAUGGCGCGUUGGCACGCGUGUUUACCGUUGGAC___GCGUGUGCCGCUAUUACCG
.........................................(((((((..((((((((.((((.(....).)))).))))))))(((((....))))).......)))))))........ (-27.09 = -27.82 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:20 2006