Locus 1037

Sequence ID X_DroMel_CAF1
Location 3,021,284 – 3,021,404
Length 120
Max. P 0.708040
window1680

overview

Window 0

Location 3,021,284 – 3,021,404
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 92.64
Mean single sequence MFE -45.55
Consensus MFE -39.96
Energy contribution -39.40
Covariance contribution -0.56
Combinations/Pair 1.14
Mean z-score -1.57
Structure conservation index 0.88
SVM decision value 0.37
SVM RNA-class probability 0.708040
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3021284 120 - 22224390
UGCUGGCGCAGGGAUCCAUUUUGCUUUCACAAUCCCUGCCCGUGAAGGGCACUUUGCAGACGCACUUGUAGCCGUUGACCUUGUCAAUGCAGGUGCCUCCAUUUCCGCACGGAUUGGUCA
....((.((((((((................))))))))))(..(((....)))..).(((((((((((....((((((...))))))))))))))...((..(((....))).))))). ( -42.59)
>DroSec_CAF1 1703 120 - 1
UGCUGGCGCAGGGAUCCAUCUUGCUCUCGCAGUCCCUGCCCGUGAAGGGCACUUUGCAGACGCACUUGUAACCGUUGACCUUGUCGAUGCAGGUGCCUCCGUUUCCGCAGGGAUUGGUCA
....(((((((((.....)))))).....((((((((((..(..(((....)))..).((.((((((((....((((((...)))))))))))))).)).......))))))))))))). ( -48.30)
>DroEre_CAF1 1721 120 - 1
UGCUGGCACAGGGAUCCAUCUUGCUCUCGCAGUCCCUGCCCGUGAAUGGCACCUUGCAGACGCACUUGUAGCCGUUGACCUUGUCGAUGCAGGUGCCACCAUUGCCGCACGGAUUGGUCA
....(((.(((((((......(((....)))))))))).(((((..(((((((((((((......)))))((.((((((...)))))))))))))))).........)))))....))). ( -41.90)
>DroYak_CAF1 1649 120 - 1
UGCUGGCGCAGGGAUCCAUUUUGCUCUCGCAGUCCCUGCCGGUGAAUGGCACCUUGCAGACGCACUUGUAUCCGUUGACCUUGUCGAUGCAGGUGCCACCAUUGCCGCAGGGAUUCGUCA
(((.((.((((((.....)))))).)).)))((((((((.((..(.((((((((.((.((..(....)..)).((((((...))))))))))))))))...)..))))))))))...... ( -49.40)
>consensus
UGCUGGCGCAGGGAUCCAUCUUGCUCUCGCAGUCCCUGCCCGUGAAGGGCACCUUGCAGACGCACUUGUAGCCGUUGACCUUGUCGAUGCAGGUGCCACCAUUGCCGCACGGAUUGGUCA
....(((((((((.....)))))).....((((((((((..(((..(((((((((((((......)))))..(((((((...))))))).)))))))).)))....))))))))))))). (-39.96 = -39.40 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:58 2006