Locus 1036

Sequence ID X_DroMel_CAF1
Location 3,021,124 – 3,021,244
Length 120
Max. P 0.546490
window1679

overview

Window 9

Location 3,021,124 – 3,021,244
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.86
Mean single sequence MFE -51.00
Consensus MFE -44.30
Energy contribution -44.05
Covariance contribution -0.25
Combinations/Pair 1.10
Mean z-score -1.54
Structure conservation index 0.87
SVM decision value 0.03
SVM RNA-class probability 0.546490
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3021124 120 - 22224390
GCCCGGCAUGCAUUGGCAACUGAAGGCGUUGAGCUUAUCAUAACAGGUGCCACCAUGCUGGCAGGGAUUGCUGCUGCACUCGUCUAUGUCCAGCUCACAACGCUUGCCCGUGUAUCCUGG
..((((.((((((.((((......(((((((((((...((((((..((((.........(((((......)))))))))..)).))))...))))))..))))))))).)))))).)))) ( -45.80)
>DroSec_CAF1 1543 120 - 1
GCCCGGCAUGCACUGGCAGCUGAAGGCGUUGAGCUUGUCGUAGCAGGUGCCUCCAUGCUGGCAGGGAUUGCUGCUGCACUCGUCGAUGUCCAGCUCACACCGCUUGCCCGUGUAUCCCGG
..((((.((((((.((((((((..((((((((.(..((.(((((((((.(((((.....)).))).))..)))))))))..)))))))))))))..........)))).)))))).)))) ( -51.00)
>DroEre_CAF1 1561 120 - 1
GCCGGGCAUGCACUGGCAGCUGAAGGCGUUGAGCUUGUCGUAGCAGGUGCCGCCAUGCUGGCAGGGAUUGCUGCUGCACUCGUCAAUGUCCAGCUCACACCGCUUGCCCGUGUAUCCCGG
.(((((.((((((.((((((((..((((((((.(..((.(((((((((.(((((.....))).)).))..)))))))))..)))))))))))))..........)))).))))))))))) ( -55.50)
>DroYak_CAF1 1489 120 - 1
GCCCGGCAUGCACUGGCAGCUAAAGGCGUUGAGCUUGUCGUAGCAGGUGCCGCCAUGCUGGCAGGGAUUGCUGCUGCACUCGUCGAUGUCCAGCUCACACCGCUUGCCCGUGUAUCCCGG
..((((.((((((.((((((....((((....((((((....))))))..))))..(((((((..((((((....)))...)))..)).))))).......)).)))).)))))).)))) ( -51.70)
>consensus
GCCCGGCAUGCACUGGCAGCUGAAGGCGUUGAGCUUGUCGUAGCAGGUGCCGCCAUGCUGGCAGGGAUUGCUGCUGCACUCGUCGAUGUCCAGCUCACACCGCUUGCCCGUGUAUCCCGG
..((((.((((((.((((......((((.((((((.(.(((.((..((((.........(((((......)))))))))..))..))).).))))))...)))))))).)))))).)))) (-44.30 = -44.05 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:57 2006