Locus 1011

Sequence ID X_DroMel_CAF1
Location 2,930,722 – 2,930,828
Length 106
Max. P 0.971610
window1634

overview

Window 4

Location 2,930,722 – 2,930,828
Length 106
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.43
Mean single sequence MFE -29.02
Consensus MFE -20.90
Energy contribution -21.14
Covariance contribution 0.24
Combinations/Pair 1.05
Mean z-score -2.51
Structure conservation index 0.72
SVM decision value 1.68
SVM RNA-class probability 0.971610
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2930722 106 - 22224390
ACUUCCAACG-----------A---CCGACUCCCCAACUUCCUCUAACUCUUUCCGAUCUUCAAAGACGCACCGGGGGCCCACCCCGAAUAAUGGGCUCCCCCACUGGAGGAUCUGGAAA
..........-----------.---........(((...(((((((........((.(((....)))))....(((((((((..........)))))))))....)))))))..)))... ( -30.60)
>DroSec_CAF1 313412 104 - 1
ACUCACAACG-----------A---CCGACUCC-CAACUUCCUCUAACUCUUCCCGAUCUUCAAAGAAGCAACGG-GGCCCACCCCGAAUAAUGGGCUCCCCCAGUGGAGGAUCUGGAAA
..........-----------.---........-................((((.(((((((..........(((-((....))))).....((((....))))...))))))).)))). ( -28.50)
>DroSim_CAF1 283155 98 - 1
ACUCACAACG-----------A---CCG-------AACUUCCUCUAACUCUUCCCGAUCUUCAAAGGAGCACCGG-GGCCCACCCCGAAUAAUGGGCUCCCCCAGUGGAGGAUCUGGAAA
..........-----------.---...-------...............((((.(((((((...((....))((-((((((..........)))))))).......))))))).)))). ( -29.10)
>DroEre_CAF1 339434 118 - 1
ACUUUCAUAAUUCCUGAACCGACCGCCCACCCC-CAACUUCCUUUAACUCUUCCCGAUCUUCAAAGAAGCACCGG-GGCCCACCCCGAAUAGUGGGUCCCCCCACUGGAGGAUCUGGAAA
.................................-................((((.(((((((..........(((-((....)))))..(((((((....)))))))))))))).)))). ( -33.90)
>DroYak_CAF1 322660 103 - 1
ACUUCCAUGG-----------A---CUCCCCCC-CAACUUUCUCUAACUCUUCCCGAUCUUCAAAGAAGCACCAG-GGCCCACCCCGAAUAGCGG-UUCCCCCACUGGAGGAUCUGGAAA
.......(((-----------.---.......)-))..............((((.(((((((............(-((.....)))...(((.((-.....)).)))))))))).)))). ( -23.00)
>consensus
ACUUACAACG___________A___CCGACCCC_CAACUUCCUCUAACUCUUCCCGAUCUUCAAAGAAGCACCGG_GGCCCACCCCGAAUAAUGGGCUCCCCCACUGGAGGAUCUGGAAA
..................................................((((.(((((((..........(((.((....)))))......(((....)))....))))))).)))). (-20.90 = -21.14 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:17 2006