Locus 1009

Sequence ID X_DroMel_CAF1
Location 2,922,186 – 2,922,293
Length 107
Max. P 0.986431
window1632

overview

Window 2

Location 2,922,186 – 2,922,293
Length 107
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 90.30
Mean single sequence MFE -22.87
Consensus MFE -20.85
Energy contribution -20.85
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.09
Structure conservation index 0.91
SVM decision value 2.04
SVM RNA-class probability 0.986431
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2922186 107 + 22224390
--CAAUUUUUCACCACCCAU---GCCACUAUGGCCUUGCAGUGAUUAAUUUCUAUUAUUAUGACACUGAUUAGGUCCACUUACAGGCUCAUUACAGUCAUGAGCACAUAAUA
--.((((..((((....((.---(((.....)))..))..))))..)))).....(((((((...(((..((((....)))))))((((((.......)))))).))))))) ( -23.10)
>DroPse_CAF1 421745 112 + 1
ACCAAUUUCUCCCAAGCCAACUACCCAACUUGGCCUUGCAGUGAUUAAUUUCUAUUAUUAUGACACUGAUUAGGUCCACUUACAGGCUCAUUACAGUCAUGAGCACAUAAUG
..............................((((((..(((((..((((.......))))...)))))...))).))).......((((((.......))))))........ ( -20.80)
>DroSim_CAF1 277667 107 + 1
--CCAUUUUUCACCACCCAU---GCCACUGUGGCCUUGCAGUGAUUAAUUUCUAUUAUUAUGACACUGAUUAGGUCCACUUACAGGCUCAUUACAGUCAUGAGCACAUAAUA
--..................---......(((((((..(((((..((((.......))))...)))))...))).))))......((((((.......))))))........ ( -24.00)
>DroEre_CAF1 333072 107 + 1
--CCUUUUUGCGCCACCCAU---GCCAUUAUGGCCUUGCAGUGAUUAAUUUCUAUUAUUAUGACACUGAUUAGGUCCACUUACAGGCUCAUUACAGUCAUGAGCACAUAAUA
--..................---...((((((((((..(((((..((((.......))))...)))))...))))..........((((((.......)))))).)))))). ( -22.30)
>DroYak_CAF1 317239 107 + 1
--CCCUUUUUCGCCACCAAU---GCCAUUAUGGCCUUGCAGUGAUUAAUUUCUAUUAUUAUGACACUGAUUAGGUCCACUUACAGGCUCAUUACAGUCAUGAGCACAUAAUA
--.......((((...(((.---(((.....))).)))..))))...........(((((((...(((..((((....)))))))((((((.......)))))).))))))) ( -23.60)
>DroPer_CAF1 443038 112 + 1
ACCAAUUUCUCCCAAGCCAACUACCCAGCUUGGCCUUGCAGUGAUUAAUUUCUAUUAUUAUGACACUGAUUAGGUCCACUUACAGGCUCAUUACAGUCAUGAGCACAUAAUG
...........((((((..........))))))(((..(((((..((((.......))))...)))))...)))...........((((((.......))))))........ ( -23.40)
>consensus
__CAAUUUUUCACCACCCAU___GCCACUAUGGCCUUGCAGUGAUUAAUUUCUAUUAUUAUGACACUGAUUAGGUCCACUUACAGGCUCAUUACAGUCAUGAGCACAUAAUA
..............................((((((..(((((..((((.......))))...)))))...))).))).......((((((.......))))))........ (-20.85 = -20.85 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:15 2006