| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,901,872 – 2,901,972 |
| Length | 100 |
| Max. P | 0.500000 |
| Location | 2,901,872 – 2,901,972 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 74.42 |
| Mean single sequence MFE | -23.93 |
| Consensus MFE | -17.60 |
| Energy contribution | -17.27 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.27 |
| Mean z-score | -0.70 |
| Structure conservation index | 0.74 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2901872 100 + 22224390 ----AGAAUAUUUAA--CU--UUUUCUGCACUUUUUGAUCGCAUUUCAGACCACUGUAGCCAUUGGCGUCGGCGUCGGCUGCCAUUGAUUAAGUGUUUCGAGUGUUUC ----((((.......--..--..))))(((((((((((.......))))).((((.((..((.((((((((....)))).)))).))..))))))....))))))... ( -22.80) >DroPse_CAF1 395528 99 + 1 ACUUC---------UUUGAGAAUUACACCAUAUAUUACACGAGUGUAGAACCACUGUAACGAAUGGCGUCGGCGUCGGCUGCCAUUGAUUAAGUGUUUCGAGUGUUUU .....---------..........(((((......((((....))))(((.((((.(((..((((((((((....)))).))))))..))))))).)))).))))... ( -24.50) >DroSec_CAF1 288613 104 + 1 ----CCAAUAAUUAUAAUCUAAUUUCUGCACUUUUUGAACGCAUUUCAGACCACUGUAGCCAUUGGCGUCGGCGUCGGCUGCCAUUGAUUAAGUGUUUCGAGUGUUUC ----.......................((((((...((((((...((((......((((((...((((....))))))))))..))))....)))))).))))))... ( -23.70) >DroEre_CAF1 312363 96 + 1 UACUC-----------AUC-AUUUUCAUCACUUUUUAGUUGCACUUUGGGCCACUGUGGCCAUUGGCGUCGGCGUCGGCUGCCAUUGAUUAAGUGUUUCGAGUGUUUC (((((-----------...-.........(((....))).((((((..((((.....))))..((((((((....)))).))))......))))))...))))).... ( -27.00) >DroYak_CAF1 296991 108 + 1 UACCCCAAGAAUUUUAAUCUAUUUUCAUCACUUUUUAAACGCAUUUUAGACCACUGUAGCCAUUGGCGUCGGCGUCGGCUGCCAUUGAUUAAGUGUUUCGAGUGUUUC ........................................((((((.((((.(((.((..((.((((((((....)))).)))).))..))))))))).))))))... ( -21.10) >DroPer_CAF1 416019 99 + 1 GCUUC---------UUUGAGAAUUACACCAUAUAUUACACGAGUGUAGAACCACUGUAACGAAUGGCGUCGGCGUCGGCUGCCAUUGAUUAAGUGUUUCGAGUGUUUU .....---------..........(((((......((((....))))(((.((((.(((..((((((((((....)))).))))))..))))))).)))).))))... ( -24.50) >consensus ___UC_________U_AUC_AAUUUCACCACUUUUUAAACGCAUUUAAGACCACUGUAGCCAUUGGCGUCGGCGUCGGCUGCCAUUGAUUAAGUGUUUCGAGUGUUUC ........................................((((((.((((.(((.(((.((.((((((((....)))).)))).)).)))))))))).))))))... (-17.60 = -17.27 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:03 2006