| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 725,748 – 725,851 |
| Length | 103 |
| Max. P | 0.764261 |
| Location | 725,748 – 725,851 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 79.70 |
| Mean single sequence MFE | -26.90 |
| Consensus MFE | -19.40 |
| Energy contribution | -19.30 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.764261 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 725748 103 - 1281640 AUAUAGGUUUUUCGAAUUAUAAGAGUCACGGCGAAGAUUUGAAUAUCUUUGAUUUGGACAAUU-------UAUACGGAGUAUAAAGCCGUCUUACUCUCGGGAGUUUGAG ...........(((((((...(((((.(((((((((((......))))))...........((-------(((((...))))))))))))...)))))....))))))). ( -25.10) >DroSec_CAF1 14001 100 - 1 AUAUAGGGUUUUCUAACUAUAAGAGUCACGGCGAUAAUUU----------GAUUUUGCCAAAUACAAUGGCAUAAGGAGUAUAAAGCCGUCUUGCUCGCGUGAGUUGGAG ...........(((((((....((((.(((((.(((.(((----------.....(((((.......)))))...))).)))...)))))...)))).....))))))). ( -27.70) >DroSim_CAF1 2372 110 - 1 AUAUAGGGUUUUCUAACUAUAAGAGUCACGGCGAUAAUUUGAAUAUCUUUGAUUUUGCCAAAUGCAAUGGCAUAAGGAGUAUAAAGCCGUACUACUCGCGUGAGUUGGAG ...........(((((((....((((.(((((.(((.........((((((....(((((.......))))))))))).)))...)))))...)))).....))))))). ( -27.90) >consensus AUAUAGGGUUUUCUAACUAUAAGAGUCACGGCGAUAAUUUGAAUAUCUUUGAUUUUGCCAAAU_CAAUGGCAUAAGGAGUAUAAAGCCGUCUUACUCGCGUGAGUUGGAG ...........(((((((....((((.(((((........................((((.......))))(((.....)))...)))))...)))).....))))))). (-19.40 = -19.30 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:34 2006