Locus 98

Sequence ID 4_DroMel_CAF1
Location 724,614 – 724,725
Length 111
Max. P 0.993405
window153

overview

Window 3

Location 724,614 – 724,725
Length 111
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 88.23
Mean single sequence MFE -34.44
Consensus MFE -29.42
Energy contribution -29.90
Covariance contribution 0.48
Combinations/Pair 1.19
Mean z-score -2.34
Structure conservation index 0.85
SVM decision value 2.40
SVM RNA-class probability 0.993405
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 724614 111 - 1281640
UAAGGUUAGUUGGCGGAAGAUGAAAGCGAUU--CGGCACGGUGCAGUUCUGCAGCUGCGUUGUGUCGUUAAGCAUAUCGUGGCAACGGAAUCUGAAAAUAAAGGAAGAACCAA
...((((.((((.((...((((...((....--((((((..((((((......))))))..))))))....)).)))).)).))))....(((........)))...)))).. ( -35.60)
>DroSec_CAF1 12852 113 - 1
UAAUGGUAGUUGGCGGAAGAUGAAAGCGAUUUGCGGCACGGUGCAGUUCUGCAGCUGCGUUGUGUCGUAAAGCAUAUCGUGGCAACGGAAUCUGAAAAUAAAGGAAGGACCGA
...((((.((((.((...((((...((...(((((((((..((((((......))))))..))))))))).)).)))).)).))))....(((........)))....)))). ( -37.40)
>DroSim_CAF1 1208 113 - 1
UAAUGGUAGUUGGCGGAAGAUGAAAGCGAUUUGCGGCACGGUGCAGUUCUGCAGCUGCGUUGUGUCGUAAAGCAUAUCGUGGCAACGGAAUCUGAAAAUAAAGGAAGGACCGA
...((((.((((.((...((((...((...(((((((((..((((((......))))))..))))))))).)).)))).)).))))....(((........)))....)))). ( -37.40)
>DroEre_CAF1 13958 112 - 1
UAAGGGUAGUUGGCGGAAGAUGAAAGCGACUUGCUUCACAGUGCAGUUCUGCAGCUGCGUUGG-AUGUAAAGCAUAUCGCGGCAACGGAAUCUAAAAAUAAAGGACGGCCCAA
...((((.(((..(....)......((((..(((((.(((.((((((......))))))....-.))).)))))..))))(....).................))).)))).. ( -33.40)
>DroYak_CAF1 18557 108 - 1
UAAGGGUAGUUGGCGGAAGAUAAAAGCUAUUUGCGCCGCAGUGCAGUUUUGCAGCUGCCUUGUAAUGUAAAGCAUAUCGCGGCAACGGAAUCUAAAAAUAAAGG-----CCAA
....(((..(((.....((((....((.....))(((((.(((..((((((((..(((...))).)))))))).))).)))))......)))).....)))..)-----)).. ( -28.40)
>consensus
UAAGGGUAGUUGGCGGAAGAUGAAAGCGAUUUGCGGCACGGUGCAGUUCUGCAGCUGCGUUGUGUCGUAAAGCAUAUCGUGGCAACGGAAUCUGAAAAUAAAGGAAGGACCAA
........((((.((...((((...((...(((((((((((((((((......))))))))))))))))).)).)))).)).))))................((.....)).. (-29.42 = -29.90 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:33 2006