| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 723,203 – 723,298 |
| Length | 95 |
| Max. P | 0.650140 |
| Location | 723,203 – 723,298 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 76.79 |
| Mean single sequence MFE | -34.37 |
| Consensus MFE | -17.79 |
| Energy contribution | -19.33 |
| Covariance contribution | 1.54 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.650140 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 723203 95 + 1281640 CGAAACGGAACAACUUUUUGCUCCACGAGCAUGUGCCGUGUCGUUGGCACGUGCCACGUGGCGAUUGCUUGGGC--UGCGUUCCAUCCUC-AGCACC------A ......((............(.(((((.((((((((((......))))))))))..))))).)..((((.(((.--((.....)).))).-))))))------. ( -35.50) >DroPse_CAF1 17166 91 + 1 CAGAGCGGAA-AACUUUUCAAAGCACGAGGAUGUACCGUGUCGCUGGCACGUGGCACAUCGCAAUUG-----------CGCUCCAGCUCC-AGUACUGAAGUUA (((.(((((.-...........(((((.(......)))))).(((((..(((.((.....))....)-----------))..))))))))-.)).)))...... ( -25.10) >DroSec_CAF1 11417 95 + 1 CGAAACGGAAAAACUUUUUGCUGCACGAGCAUGUGCCGUGUCGUUGGCACGUGCCACGUGCCGAUUGCUUGGGC--UGCGUUCCAUCCUC-AGCACC------A ......((............(.(((((.((((((((((......))))))))))..))))).)..((((.(((.--((.....)).))).-))))))------. ( -35.20) >DroEre_CAF1 12232 97 + 1 CGAAACGGAACAACUUUUCGCUGC-UGAGCAUGUGCCGUGUCGUUGGCACGUGCCACGUGGCGAUAGCUUUAGCUGCGCGUUCCAUCCUCUUGCACC------A ......(((((......((((..(-((.((((((((((......)))))))))))).)..))))((((....))))...))))).............------. ( -40.30) >DroYak_CAF1 16708 93 + 1 CGAAACGGAAAAACU-UUCGCUGC-CGAGCAUGUGCCGUGUCGUUGGCACGUGCCACGUGGCGAUUGCUUGAGC--CGCGUUCCAUACUC-AGUACC------A .(((.(((..((.(.-.((((..(-...((((((((((......))))))))))...)..))))..).))...)--))..))).......-......------. ( -33.60) >DroAna_CAF1 119693 92 + 1 CCGGGCG-AAAAACUUUUUG--GCACGAGCAUGUGCCGUGUCAACGGCGCGUGGCACGUGGCGAUAGCUUAAGC--UACGUUCCAGCUUC-AGCAAU------A ..(((((-.........(((--.((((.(((((((((((....))))))))).)).)))).)))((((....))--)))))))..((...-.))...------. ( -36.50) >consensus CGAAACGGAAAAACUUUUCGCUGCACGAGCAUGUGCCGUGUCGUUGGCACGUGCCACGUGGCGAUUGCUUGAGC__UGCGUUCCAUCCUC_AGCACC______A ......(((..............((((.((((((((((......))))))))))..))))(((...((....))....)))))).................... (-17.79 = -19.33 + 1.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:30 2006