| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 675,203 – 675,301 |
| Length | 98 |
| Max. P | 0.863413 |
| Location | 675,203 – 675,301 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 80.10 |
| Mean single sequence MFE | -20.18 |
| Consensus MFE | -4.73 |
| Energy contribution | -6.09 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.23 |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.863413 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 675203 98 - 1281640 AUAUUUAAAAGGCAGUUCAU--GUUACGGAAUUAAAAUUAGUAUAUUAGACCGGAAUAAAACUGUAACAUGA-AAAACUGCCCUAAUGGGACCCAACAAGU ..........((((((((((--(((((((..(((...(..((.......))..)..)))..)))))))))))-...))))))....(((...)))...... ( -22.20) >DroSec_CAF1 8430 98 - 1 AAAAUCAAAAGGCAGUUCAU--GUUACGGAAUUAAAACUAGUAUAUUCGACCGGAAAAAAACUGUAACAUGA-AAAACUGUCCUAAUGGGACCCAAAAAGU ....(((..(((((((((((--(((((((.((((....))))...(((.....))).....)))))))))))-...)))).)))..)))............ ( -22.00) >DroSim_CAF1 6490 98 - 1 AAAAUCAAAAGGCAGUUCAU--GUUACGGAAUUAAAACUAGUAUAUUCGACCGGAAUAAAACUGUAACAUGA-AAAACUGUCCUAAUGGGACCCAAAAAGU ....(((..(((((((((((--(((((((.((((....)))).(((((.....)))))...)))))))))))-...)))).)))..)))............ ( -24.40) >DroEre_CAF1 20623 101 - 1 AUUUUUAAAAAGCAGCCCAUGUGUUACGGUAUAAAAACUAGUAUUUUAGUGUGGGAUAAGUGGGUAACAUGAUAAAAUUACAUUAAUGGGAGGCAAAAAGU ...........((..(((((....((((((......))).)))...((((((((.....(((.....))).......)))))))))))))..))....... ( -19.50) >DroYak_CAF1 9734 97 - 1 AUUUUAAAAAGGCAGCCCAU--GUUACGGAAUAACAACUAGUACUUUAGUGUGGGAUAAAACUGUUAUA-GAAAAAAUUAUCUU-AUGGAAACCAAAAAGU ..........((...(((((--((((.....)))).(((((....))))))))))......((((...(-((........))).-))))...))....... ( -12.80) >consensus AUAUUCAAAAGGCAGUUCAU__GUUACGGAAUUAAAACUAGUAUAUUAGACCGGAAUAAAACUGUAACAUGA_AAAACUGUCCUAAUGGGACCCAAAAAGU ..........(((((((.....(((((((................................))))))).......)))))))................... ( -4.73 = -6.09 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:23 2006