| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 154,182 – 154,287 |
| Length | 105 |
| Max. P | 0.684576 |
| Location | 154,182 – 154,287 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 93.02 |
| Mean single sequence MFE | -29.60 |
| Consensus MFE | -22.74 |
| Energy contribution | -22.80 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.684576 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 154182 105 + 1281640 UUAUACAGAAAUGUGCUCAACGCGUGCUUUGGUGUAUGUGUAUUCACAUUACCACUUAACAAGUUAAAGGGUGUCCUGCCCAGAGGAACCAGAUUAAGCUUGAAG .........((((((....((((((((......))))))))...)))))).........((((((.((.(((.((((......)))))))...)).))))))... ( -28.00) >DroSec_CAF1 28760 105 + 1 UUAUACAGAAAUGUGCUCAACGCGUGCUUUGGUGUAUGUGUAUUCACAUUACAACUUAACAAGUUAAAUGGUGUCCUGCCCAAAGGAACCAGAUUAAGCUUGAAG .......(.((((((....((((((((......))))))))...)))))).).......((((((...((((.((((......)))))))).....))))))... ( -29.50) >DroEre_CAF1 15961 105 + 1 CUAUACAAAAAUGUGCUCAAUGCGUGCUUUGGUGUAUGUGUAUUCACAUUAACACUUAACAAGUUAAAUGGCGUCCUGCCCAGCGGGACCAGAUUAAGCUUGAAG .........((((((....((((((((......))))))))...)))))).........((((((.(((.(.(((((((...))))))))..))).))))))... ( -29.10) >DroYak_CAF1 16116 105 + 1 CUAUACAGAAAUGUGUUCAAUGCGUGCUUUGGUGUAUGUGUAUUUACAUUUCCACUUAACAAGUUAAAUGGCGUCCUGCCCAGCGGGACCAGAUUAAGCUUGAAG .......((((((((....((((((((......))))))))...)))))))).......((((((.(((.(.(((((((...))))))))..))).))))))... ( -31.80) >consensus CUAUACAGAAAUGUGCUCAACGCGUGCUUUGGUGUAUGUGUAUUCACAUUACCACUUAACAAGUUAAAUGGCGUCCUGCCCAGAGGAACCAGAUUAAGCUUGAAG .........((((((....((((((((......))))))))...)))))).........((((((...((((.(((........))))))).....))))))... (-22.74 = -22.80 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:01 2006