Locus 87

Sequence ID 4_DroMel_CAF1
Location 634,335 – 634,455
Length 120
Max. P 0.745235
window138

overview

Window 8

Location 634,335 – 634,455
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.00
Mean single sequence MFE -30.22
Consensus MFE -26.08
Energy contribution -25.16
Covariance contribution -0.92
Combinations/Pair 1.26
Mean z-score -1.42
Structure conservation index 0.86
SVM decision value 0.46
SVM RNA-class probability 0.745235
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 634335 120 + 1281640
GUAGAUAUUAACACAGAGGUGAAGAGUAUAGCCGUCAACAAAAAAGGCGUAUAUUUUGCUUUCAGAGAUCAGGGCGCUUGUAUUAGCGUUCUGGCAGUAAAAGUAUAUUAUAUUACGUGU
..........((((.((((..(((.((((.(((............))))))).)))..))))....(.((((((((((......))))))))))).......(((........))))))) ( -29.80)
>DroGri_CAF1 5066 120 + 1
GUGGAUAUAAAUACCGAAGUGAAGAGCAUAGCUGUUAACAAGAAGGGUGUCUAUUUCGCUUUCCGGGAUCAGGGCGCUUGCAUAAGUGUUCUUGCGGUAAAAGUCUACUACAUCACAUGU
((((((.....(((((.....((((((((...(((.........((((((((((..((.....))..))..)))))))))))...)))))))).)))))...))))))............ ( -29.50)
>DroSec_CAF1 10327 120 + 1
GUAGAUAUUAACACAGAGGUGAAAAGUAUAGCCGUGAACAAAAAAGGCGUAUAUUUUGCUUUCAGAGAUCAGGGCGCUUGUAUUAGCGUUCUGGCAGUAAAAGUAUAUUAUAUUACGUGU
..........((((.((((..(((.((((.(((............))))))).)))..))))....(.((((((((((......))))))))))).......(((........))))))) ( -30.10)
>DroSim_CAF1 16406 120 + 1
GUAGAUAUUAACACAGAGGUGAAAAGUAUAGCCGUGAACAAAAAAGGCGUAUAUUUUGCUUUCAGAGAUCAGGGCGCUUGUAUUAGCGUUCUGGCAGUAAAAGUAUAUUAUAUUACGUGU
..........((((.((((..(((.((((.(((............))))))).)))..))))....(.((((((((((......))))))))))).......(((........))))))) ( -30.10)
>DroYak_CAF1 3822 120 + 1
GUAGAUAUUAACACUGAGGUGAAGAGCAUAGCCGUGAACAAAAAAGGCGUAUAUUUUGCUUUCAGAGAUCAGGGCGCUUGUAUUAGCGUCCUGGCGGUAAAAGUAUAUUAUAUUACGUGU
...........(((....)))....((((.(((((........((((((.......)))))).......(((((((((......))))))))))))))....(((........))))))) ( -31.60)
>consensus
GUAGAUAUUAACACAGAGGUGAAGAGUAUAGCCGUGAACAAAAAAGGCGUAUAUUUUGCUUUCAGAGAUCAGGGCGCUUGUAUUAGCGUUCUGGCAGUAAAAGUAUAUUAUAUUACGUGU
((((...........(((((((((.((((.(((............))))))).)))))))))....(.((((((((((......))))))))))).................)))).... (-26.08 = -25.16 +  -0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:15 2006