Locus 85

Sequence ID 4_DroMel_CAF1
Location 625,766 – 625,883
Length 117
Max. P 0.878510
window135

overview

Window 5

Location 625,766 – 625,883
Length 117
Sequences 3
Columns 117
Reading direction reverse
Mean pairwise identity 90.03
Mean single sequence MFE -41.80
Consensus MFE -37.84
Energy contribution -38.40
Covariance contribution 0.56
Combinations/Pair 1.06
Mean z-score -2.12
Structure conservation index 0.91
SVM decision value 0.90
SVM RNA-class probability 0.878510
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 625766 117 - 1281640
ACUCUGGCCACAUCUCGGGAGGAGACAGUGGAGACACGGAUGUCAAUGGAGAUGGUGCAGGUGGAGGAGUCGUUGAGGUUGGUGAAGUCACCAACCAAUCCAGCGAGGCUACAGGGA
.(((((((..((((((.(...((.(..(((....)))...).))..).))))))..)).......((..((((((.((((((((....))))))))....))))))..)).))))). ( -48.50)
>DroEre_CAF1 6614 114 - 1
ACUCUGGCCACAUCUCGGGAGGAGACAGUGGCGACACGGAUGUCAAUGGAGAUGAUGGAGGUAGAGGAGUCGUUGAUGUUGGUGACCUC---AACCAAUCCAGCGAGGCUGCAGGGA
.(((((.(((((((((.(...((.(..(((....)))...).))..).)))))).))).......((..((((((..((((((......---.)))))).))))))..)).))))). ( -40.20)
>DroYak_CAF1 7239 117 - 1
ACUCUGGCCACAUCUCGGGAGGAGACAGUGGCGACACGGAUGUCAAUGGAGAUGAUGGAGGUAGAGGAGUCACUGAGGUUGGAGAGGUCAUUACCCAAUCCAGCGAGGCUGUAGGGA
.(((((.(((((((((.(...((.(..(((....)))...).))..).)))))).)))...)))))(..((.(((.((((((..((....))..))))))))).))..)........ ( -36.70)
>consensus
ACUCUGGCCACAUCUCGGGAGGAGACAGUGGCGACACGGAUGUCAAUGGAGAUGAUGGAGGUAGAGGAGUCGUUGAGGUUGGUGAAGUCA__AACCAAUCCAGCGAGGCUGCAGGGA
.((((((((.((((((.(...((.(..(((....)))...).))..).))))))...............((((((.(((((((..........))))))))))))))))..))))). (-37.84 = -38.40 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:11 2006