Locus 84

Sequence ID 4_DroMel_CAF1
Location 623,580 – 623,678
Length 98
Max. P 0.651284
window134

overview

Window 4

Location 623,580 – 623,678
Length 98
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 86.05
Mean single sequence MFE -38.87
Consensus MFE -29.61
Energy contribution -29.73
Covariance contribution 0.12
Combinations/Pair 1.17
Mean z-score -2.02
Structure conservation index 0.76
SVM decision value 0.25
SVM RNA-class probability 0.651284
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 623580 98 + 1281640
GCCGCCAUGUGGGUCCAAGUCCGUCGGUAUUGUGCCGGUGGAGCCACUUGGACCUGUUGCUGACCCAAGAGACAUUCCAGAGCUCAAAGGAGCUCGCU
((.((...(..(((((((((((..((((.....))))..)))....))))))))..).))...................((((((....)))))))). ( -39.90)
>DroEre_CAF1 4272 98 + 1
GCCGCUAUGUGAGUCAACUUCCGUCGGCAUGGUUCCGGUGGAGCCACUUGAACCUGUUGCUGACCCAAGUGUUACUACAGAGCUCAAAGGAGCUCGCU
...((..(((.(((..((((..(((((((.(((((.((((....)))).)))))...)))))))..))))...))))))((((((....)))))))). ( -42.00)
>DroYak_CAF1 5508 98 + 1
GCCGCCAUGGGACUCAACUUCCGUUGGCAUGGUUCCGGUGGAGCUGCUUGAACCUGUUGCAGACCCAAGUGUCACUGCAGAGCUCAAAGGAGCUCGCU
((.(((((((((......))))).))))..(((((.(((......))).)))))...(((((((......)))..))))((((((....)))))))). ( -34.70)
>consensus
GCCGCCAUGUGAGUCAACUUCCGUCGGCAUGGUUCCGGUGGAGCCACUUGAACCUGUUGCUGACCCAAGUGUCACUACAGAGCUCAAAGGAGCUCGCU
...((.................(((((((.(((((.((((....)))).)))))...)))))))...............((((((....)))))))). (-29.61 = -29.73 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:10 2006