Locus 83

Sequence ID 4_DroMel_CAF1
Location 608,201 – 608,303
Length 102
Max. P 0.921187
window133

overview

Window 3

Location 608,201 – 608,303
Length 102
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 77.46
Mean single sequence MFE -33.67
Consensus MFE -22.84
Energy contribution -22.65
Covariance contribution -0.19
Combinations/Pair 1.40
Mean z-score -1.78
Structure conservation index 0.68
SVM decision value 1.14
SVM RNA-class probability 0.921187
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 608201 102 + 1281640
UAGGCUUAAAUUGCGGAGCGUGUGGGGAGUUGCUUGGACUUCGUCCAGAAAACUUGGAAGCUCUACCCUGUGCACACAUUCUUCAUGCAAGGUAAGCU----UUUA
.(((((((..((((((((.(((((..(((((..((((((...))))))..)))))....((.(......).)).))))).))))..))))..))))))----)... ( -34.90)
>DroPse_CAF1 2838 97 + 1
UAGGCCUAAAUUGUGGUGCUUGUGGGGAAUUAUUCGGCUUACAGCCGGGCAAUCUAGAAGCCCUACCCUGUGCACACAUUCUCCAUGCGAGGUAGGU---------
...(((((...((((.(((..(..(((........(((.....)))((((.........))))..)))..)))))))).((((.....)))))))))--------- ( -32.00)
>DroGri_CAF1 3042 106 + 1
UGGGCCUCAAUUGUGGGGCAUGUGGCGAGGUCUUUGGGCUACAACCAGCCAACCUUGAGGCACUACCAUGUGCCCACAUACUCCAUGCCAGGUAAUUCGACCCUCA
..(((.......((((((.(((((.((((((.....((((......)))).)))))).(((((......)))))))))).))))))))).(((......))).... ( -39.11)
>DroEre_CAF1 3398 100 + 1
UAGGCUUAAAUUGCGGAGCGUGUGGGGAGUUGUUUGGCCUUCGUCCAGAAAACUUGGAAGCUCUACCCUGUGCACACAUUCUUCAUGCAAGGUAAGCC----UU--
.(((((((..((((((((.(((((..(((((.((((((....).))))).)))))....((.(......).)).))))).))))..))))..))))))----).-- ( -34.80)
>DroYak_CAF1 4133 100 + 1
UAGGCUUAAAUUGCGGAGCGUGUGGGGAGUUGUUUGGUCUUCGUCCGGAAAACUUGGAAGCUCUACCCUGUUCACACAUUCUUCAUGCAAGGUAAGUU----UA--
((((((((..((((((((.(((((.((((((....(((.(((.....))).)))....))))))..........))))).))))..))))..))))))----))-- ( -29.20)
>DroPer_CAF1 2838 97 + 1
UAGGCCUAAAUUGUGGUGCUUGUGGGGAAUUAUUCGGCUUACAGCCGGGCAAUCUAGAAGCCCUACCCUGUGCACACAUUCUCCAUGCGAGGUAGGU---------
...(((((...((((.(((..(..(((........(((.....)))((((.........))))..)))..)))))))).((((.....)))))))))--------- ( -32.00)
>consensus
UAGGCCUAAAUUGCGGAGCGUGUGGGGAGUUGUUUGGCCUACAUCCAGAAAACCUGGAAGCUCUACCCUGUGCACACAUUCUCCAUGCAAGGUAAGU_____UU__
..((((((..((((((((.(((((....(((.(((((.......))))).)))......((.(......).)).))))).))))..))))..))))))........ (-22.84 = -22.65 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:08 2006