Locus 82

Sequence ID 4_DroMel_CAF1
Location 599,336 – 599,452
Length 116
Max. P 0.997422
window132

overview

Window 2

Location 599,336 – 599,452
Length 116
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 90.99
Mean single sequence MFE -28.82
Consensus MFE -27.42
Energy contribution -27.79
Covariance contribution 0.37
Combinations/Pair 1.09
Mean z-score -2.82
Structure conservation index 0.95
SVM decision value 2.86
SVM RNA-class probability 0.997422
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 599336 116 + 1281640
CUUAGACCUGAAUCCAAAAUUUUCUGUCAAUGUAUUAA---AAGCCUUUAAAGCGACAAAAAA-AUUUUUUUAGAAUUACAGGCUGUUAUUACUUUGGCAGGAUUAUAUUAAUGCGGACC
.......(((...........(((((((((.(((.(((---.(((((.(((..(...(((((.-...))))).)..))).))))).))).))).)))))))))...........)))... ( -25.05)
>DroSec_CAF1 5347 116 + 1
CUUAGACCUGUAUCCAAAAUUUUCUGUCAAUGUAUUAA---AAGCCUUUAAAGCGACGAAAUU-UGUUUUUUAGAAUUACAGGCUGUUAUUACUUUGGCAGGAUUAUAUUAAUGCGGACC
.......((((((........(((((((((.(((.(((---.(((((.(((..(...((((..-...))))..)..))).))))).))).))).)))))))))........))))))... ( -28.89)
>DroEre_CAF1 6800 120 + 1
CUUAGACCUGUAUCCAAAACUUUCUGCCAAUGUAUUAAAUUAAGCCUUUAAAACGACGAAAAUGUAUUUUUUAGAAUUACAGGUUGUUAUUACAUUGGCAGGAUAAUAUUAAUGCGGACC
.......((((((........(((((((((((((.(((....(((((.(((..(...(((((.....))))).)..))).))))).))).)))))))))))))........))))))... ( -31.79)
>DroYak_CAF1 8434 117 + 1
CUUAGACCUGUAUUCAAAACUUUCUGUCAAUGUACUAA---AAGCCUUUAAAGCGACGAAAAUGUAUUUUUUAGAAUUACAGGUUGUUAUUACAUUGGCAGGAUAAUAUUACUGCGGACC
.......(((((.........(((((((((((((.(((---.(((((.(((..(...(((((.....))))).)..))).))))).))).))))))))))))).........)))))... ( -29.57)
>consensus
CUUAGACCUGUAUCCAAAACUUUCUGUCAAUGUAUUAA___AAGCCUUUAAAGCGACGAAAAU_UAUUUUUUAGAAUUACAGGCUGUUAUUACAUUGGCAGGAUAAUAUUAAUGCGGACC
.......((((((........(((((((((((((.(((....(((((.(((..(...((((......))))..)..))).))))).))).)))))))))))))........))))))... (-27.42 = -27.79 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:07 2006