Locus 76

Sequence ID 4_DroMel_CAF1
Location 571,993 – 572,113
Length 120
Max. P 0.545236
window122

overview

Window 2

Location 571,993 – 572,113
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 89.36
Mean single sequence MFE -25.80
Consensus MFE -18.15
Energy contribution -20.27
Covariance contribution 2.12
Combinations/Pair 1.08
Mean z-score -2.40
Structure conservation index 0.70
SVM decision value 0.02
SVM RNA-class probability 0.545236
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 571993 120 - 1281640
AUAAAUAGUAUUUGGCAUUUCUUGCAGCAAUGAUAUAAAAUGUUUAAAAUGAGAAUAAGUUGUUUACAUUUUUAUAAGAGAAGUUUUAUGCUCAAAAAGCUAGAAAUAUUUUGACCACAC
.......((((..(((.(((((((.((.((((..((((..(((((.......)))))..))))...)))).)).))))))).)))..))))((((((...((....))))))))...... ( -17.00)
>DroSec_CAF1 2503 117 - 1
AUAAAUAGUAUUUUGCAUUUCUUGCAGCGAUGAUAUAAAGUGGUUAAAAUGAAGCUAAGU---UCACAUUUUUAUAAAUGGAGUUUUAUGCUCAAAAAGCUAGUAACAUUUUGACCACAC
....(((.(((((((((.....))))).)))).)))...((((((((((((..((((.((---(..(((((....)))))((((.....))))....)))))))..)))))))))))).. ( -31.30)
>DroSim_CAF1 2474 117 - 1
AUAAAUAGUAUUUUGCAUUCCUUGCAGAGAUGAUAUAAAGUGGUUAAAAUAAAGCUAAGU---UCACAUUUUUAUAAAUGGAGUUUUAUGCUCAAAAAGCUAGUAACAUUUUGACCACAC
..........(((((((.....)))))))..........(((((((((((...((((.((---(..(((((....)))))((((.....))))....)))))))...))))))))))).. ( -29.10)
>consensus
AUAAAUAGUAUUUUGCAUUUCUUGCAGCGAUGAUAUAAAGUGGUUAAAAUGAAGCUAAGU___UCACAUUUUUAUAAAUGGAGUUUUAUGCUCAAAAAGCUAGUAACAUUUUGACCACAC
....(((.(((((((((.....))))).)))).)))...((((((((((((..((((.((......(((((....)))))((((.....)))).....))))))..)))))))))))).. (-18.15 = -20.27 +   2.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:45 2006