Locus 75

Sequence ID 4_DroMel_CAF1
Location 566,637 – 566,742
Length 105
Max. P 0.956409
window121

overview

Window 1

Location 566,637 – 566,742
Length 105
Sequences 3
Columns 117
Reading direction reverse
Mean pairwise identity 59.88
Mean single sequence MFE -26.97
Consensus MFE -17.44
Energy contribution -17.00
Covariance contribution -0.44
Combinations/Pair 1.21
Mean z-score -1.14
Structure conservation index 0.65
SVM decision value 1.47
SVM RNA-class probability 0.956409
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 566637 105 - 1281640
UACCAUUAGCGACAGUAGCGGCAGCUGCGGCUGCUGUGGAAAGUCGUAUCUUGAGCUUGCAGCACCAGCAU---------CAACAUCCCCUCCAACCACAUCA---ACAAAACCAAC
(((.(((..(.((((((((.((....)).)))))))).)..))).)))..(((((((.(.....).))).)---------)))....................---........... ( -24.90)
>DroGri_CAF1 24033 87 - 1
UAUCAUCAGCAACGGCAGCUGCUGCGGCGGCGGCGGUCGAAAGUCGACUGAUGGGUUUACACCAGCAACAA---------CAGAGUAGU---------------------CAGCAGC
........((....)).((((((((.(..(..(((((((.....)))))..(((.......)))))..)..---------)...)))).---------------------))))... ( -26.00)
>DroYak_CAF1 17456 117 - 1
UACCACCAGCGACAGUAGCGGCAGCAGCGGCUGCUGUUGAAAGUCGUCUCUUAAGUUUGCAGCACCAAAUUCCACAUCAGCAACAUCAGCUGGAACCACAUCAACCACAACACCAAC
.....((((((((..((((((((((....))))))))))...)))........((((((......)))))).................)))))........................ ( -30.00)
>consensus
UACCAUCAGCGACAGUAGCGGCAGCAGCGGCUGCUGUCGAAAGUCGUCUCUUGAGUUUGCAGCACCAACAU_________CAACAUCACCU__AACCACAUCA___ACAACACCAAC
........(((((..(.((((((((....)))))))).)...)))))...................................................................... (-17.44 = -17.00 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:43 2006