Locus 72

Sequence ID 4_DroMel_CAF1
Location 551,681 – 551,783
Length 102
Max. P 0.854946
window117

overview

Window 7

Location 551,681 – 551,783
Length 102
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 79.61
Mean single sequence MFE -34.53
Consensus MFE -21.13
Energy contribution -21.91
Covariance contribution 0.78
Combinations/Pair 1.12
Mean z-score -2.07
Structure conservation index 0.61
SVM decision value 0.80
SVM RNA-class probability 0.854946
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 551681 102 - 1281640
UGCAUUAUAUUAAGCAUAUCGACCGGGUUAAUUGGAAGUCCCGCUGCGGCAGCAACUGCUCCAAAAUGCUGUUGUAUAUGCUGAAGAUUUUGUA---------GACCCUUA
((((..((....(((((((((((.(.(((..(((((.((...((((...))))....)))))))))).).)))).)))))))....))..))))---------........ ( -26.40)
>DroPse_CAF1 5239 111 - 1
UGCAUUAGGUUGAGCAUAUCCACCGGGUUAAUGGGCAUUCCCGAAGAUGCAGCAACUGCACUAAAUUGCUGCUGCAUAUGCUGCAGAUUUUGGAGAUUCUGUAGGCCCUGC
.(((...(((.((.....)).)))((((..(((((.((..((((((.(((((((..((((.((......)).))))..)))))))..))))))..)))))))..))))))) ( -38.30)
>DroSec_CAF1 274 102 - 1
UGCAUUAUAUUAAGCAUAUCGACCGGGUUAAUUGGAAGACCCGAUGCGGCAGCAACUGCUCCGAAAUGCUGUUGUAUAUGCUGAAGAUUUUGUA---------GACCCUUA
((((..((....(((((((((((((((((........))))))...(((.(((....)))))).......)))).)))))))....))..))))---------........ ( -31.60)
>DroSim_CAF1 3364 102 - 1
UGCAUUAUAUUAAGCAUAUCGACCGGGUUAAUUGGAAGACCCGAUGCGGCAGCAACUGCUCCGAAAUGCUGUUGUAUAUGCUGAAGAUUUUGUA---------GACCCUUA
((((..((....(((((((((((((((((........))))))...(((.(((....)))))).......)))).)))))))....))..))))---------........ ( -31.60)
>DroWil_CAF1 324 111 - 1
UGCAUAAGAUUCAGCAUAUCCACGGGGUUGAUGGGCAUUCCCGAGGCAGCCGCAGCAGCGCUCAACUGCUGUUGCAUAUGCUGUAGGUUUUGUAGAUUUUGCAGCCCCUGC
...........((((((((......(((((.((((....))))...)))))(((((((((......)))))))))))))))))((((..((((((...))))))..)))). ( -41.00)
>DroPer_CAF1 6861 111 - 1
UGCAUUAGGUUGAGCAUAUCCACCGGGUUAAUGGGCAUUCCCGAAGAUGCAGCAACUGCACUAAAUUGCUGCUGCAUAUGCUGCAGAUUUUGGAGAUUCUGUAGGCCCUGC
.(((...(((.((.....)).)))((((..(((((.((..((((((.(((((((..((((.((......)).))))..)))))))..))))))..)))))))..))))))) ( -38.30)
>consensus
UGCAUUAGAUUAAGCAUAUCCACCGGGUUAAUGGGAAGUCCCGAUGCGGCAGCAACUGCUCCAAAAUGCUGUUGCAUAUGCUGAAGAUUUUGUA_________GACCCUGA
((((........(((((((....((((............))))..(((((((((............))))))))))))))))........))))................. (-21.13 = -21.91 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:37 2006