| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 525,481 – 525,641 |
| Length | 160 |
| Max. P | 0.949528 |
| Location | 525,481 – 525,601 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.56 |
| Mean single sequence MFE | -34.00 |
| Consensus MFE | -32.20 |
| Energy contribution | -32.20 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.95 |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.949528 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 525481 120 + 1281640 CAGUGCAGAAACAGUGGAAACAUGGCAGAAACAGCGGAAACGGAAUCAAAAGAAGAGUAAAGCAACUGAAUGCGACAACCGCCUAAGCGCGACUUGAUUGGUCGGUUGUCGCUACUUAAA ((((((.......(((....)))...........((....))...................)).))))...(((((((((((......))((((.....)))))))))))))........ ( -36.30) >DroSec_CAF1 31772 120 + 1 CAGUGCAGAAACAGUGGAAUCAUGGCAGAAACAGCGGAAACGGAAUCAAAAGAAGAGUAAAGCGACUGAAUGCGACAACCGCCAAAGCGCGACUUGAUUGGUCGGUUGUCGCUACUUAAA ((((((.......(((....)))...........((....))...................)).))))...(((((((((((......))((((.....)))))))))))))........ ( -32.10) >DroYak_CAF1 39270 120 + 1 AAGGGCAGAAACAGUGGAAACAUGGCAGAAACAGCGGAAACGGAAUCAAAAGAAGAGUAAAGCAACUGAGUGCGACAACCGCCAAAGCGCGACUUGAUUGGUCGGUUGUCGCUGGUUAAA .....(((.....(((....))).((........((....))...((....))........))..)))...(((((((((((......))((((.....)))))))))))))........ ( -33.60) >consensus CAGUGCAGAAACAGUGGAAACAUGGCAGAAACAGCGGAAACGGAAUCAAAAGAAGAGUAAAGCAACUGAAUGCGACAACCGCCAAAGCGCGACUUGAUUGGUCGGUUGUCGCUACUUAAA .....(((.....(((....))).((........((....))...((....))........))..)))...(((((((((((......))((((.....)))))))))))))........ (-32.20 = -32.20 + -0.00)
| Location | 525,521 – 525,641 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.89 |
| Mean single sequence MFE | -43.40 |
| Consensus MFE | -37.43 |
| Energy contribution | -37.77 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.741949 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 525521 120 - 1281640 GCGAAACAAAACAGAAGGGAGAGGAGCGGGAGCCGCGGACUUUAAGUAGCGACAACCGACCAAUCAAGUCGCGCUUAGGCGGUUGUCGCAUUCAGUUGCUUUACUCUUCUUUUGAUUCCG (.(((.((((..(((((((((((.(((.(((((....).)))).....((((((((((.((....(((.....))).)))))))))))).....))).)))).))))))))))).)))). ( -41.70) >DroSec_CAF1 31812 120 - 1 GCGAUACAAAACAGAAGGGAGAGGAGCGGGAGCCGCGGACUUUAAGUAGCGACAACCGACCAAUCAAGUCGCGCUUUGGCGGUUGUCGCAUUCAGUCGCUUUACUCUUCUUUUGAUUCCG ......((((..(((((((.((((.((((...)))).((((...(((.((((((((((.((((...((.....))))))))))))))))))).)))).)))).)))))))))))...... ( -44.00) >DroYak_CAF1 39310 120 - 1 GCAAAACGAAACAGAAGGAAAAGGAGGGGGAGCCGCGGACUUUAACCAGCGACAACCGACCAAUCAAGUCGCGCUUUGGCGGUUGUCGCACUCAGUUGCUUUACUCUUCUUUUGAUUCCG .............(((..(((((((((((((((.((((.......)).((((((((((.((((...((.....)))))))))))))))).....)).))))).))))))))))..))).. ( -44.50) >consensus GCGAAACAAAACAGAAGGGAGAGGAGCGGGAGCCGCGGACUUUAAGUAGCGACAACCGACCAAUCAAGUCGCGCUUUGGCGGUUGUCGCAUUCAGUUGCUUUACUCUUCUUUUGAUUCCG ......((((..(((((((.((((.((((...)))).((((.......((((((((((.(((...(((.....))))))))))))))))....)))).)))).)))))))))))...... (-37.43 = -37.77 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:23 2006