Locus 67

Sequence ID 4_DroMel_CAF1
Location 524,186 – 524,306
Length 120
Max. P 0.627871
window106

overview

Window 6

Location 524,186 – 524,306
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 90.11
Mean single sequence MFE -28.22
Consensus MFE -21.31
Energy contribution -22.50
Covariance contribution 1.19
Combinations/Pair 1.08
Mean z-score -1.68
Structure conservation index 0.76
SVM decision value 0.19
SVM RNA-class probability 0.627871
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 524186 120 - 1281640
CCUUGCUGUUUUUGUUUUUGCACUUAUGUAUGUUUGCGAGCGUUUAGACUUGGAGUAAGUUGGGUUAUUAGCUAGUUCAAUCGUGAAUUACUUUAAGUUAGCGGCGAUAGUUUGUACUAU
..((((((((......((((((..((....))..))))))......(((((((((((((((((....)))))).(((((....))))))))))))))))))))))))((((....)))). ( -27.80)
>DroSec_CAF1 30475 116 - 1
GCUUGCUGAUUUUGUUUUUGCACUUAU----GUUUGCGUGCGUUUAGACUUGGAGUAAGUUGGGUUAUUAGCUAGUUCAAUCGUGAAUUACUUUAAGUUAGCGGCGAUAGUUUGUACUAU
(((.(((............((((.((.----...)).)))).....(((((((((((((((((....)))))).(((((....)))))))))))))))))))))).(((((....))))) ( -27.90)
>DroSim_CAF1 31325 116 - 1
GCUUGCUGAUUUUGUUUUUGCACUUAU----GUUUGCGUGCGUUUAGACUUGGAGUAAGUUGGGUUAUUAGCUAGUUCAAUCGUGAAUUACUUUAAGUUAGCGGCGAUAGUUUGUACUAU
(((.(((............((((.((.----...)).)))).....(((((((((((((((((....)))))).(((((....)))))))))))))))))))))).(((((....))))) ( -27.90)
>DroYak_CAF1 38315 112 - 1
GCUUGAUGUUUUUGUGUUUGCACAUAU--------GCGUUUGUUUAGACUUGGAGUAUGUUUCGUUAUUAGCUAGUUCAAUUAUGAAUUACUUCAAGUCAGCGGCGAUAGUUUGUACUAU
(((.(((((...((((....))))...--------)))))......(((((((((((...(((((.(((((....)).))).))))).))))))))))))))....(((((....))))) ( -29.30)
>consensus
GCUUGCUGAUUUUGUUUUUGCACUUAU____GUUUGCGUGCGUUUAGACUUGGAGUAAGUUGGGUUAUUAGCUAGUUCAAUCGUGAAUUACUUUAAGUUAGCGGCGAUAGUUUGUACUAU
..((((((...........((((.((........)).)))).....(((((((((((((((((....)))))).(((((....))))))))))))))))..))))))((((....)))). (-21.31 = -22.50 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:20 2006