Locus 65

Sequence ID 4_DroMel_CAF1
Location 523,188 – 523,302
Length 114
Max. P 0.926574
window99

overview

Window 9

Location 523,188 – 523,302
Length 114
Sequences 3
Columns 114
Reading direction forward
Mean pairwise identity 98.83
Mean single sequence MFE -34.57
Consensus MFE -31.15
Energy contribution -32.43
Covariance contribution 1.28
Combinations/Pair 1.03
Mean z-score -2.89
Structure conservation index 0.90
SVM decision value 1.18
SVM RNA-class probability 0.926574
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 523188 114 + 1281640
GGGGUGGGCGGAUGGCAAGUGAUGGGAGGGAAAGGAAGCAGAACUUCCCACUUGUGAUUGUGCUUGUGACUGUGCGUGUGUGAAAAUGUGUGUAUAAAAAAGAGACAACUGUCU
(..(..(((((((.((((((...((((((....(....)....)))))))))))).))).))))..)..)((((((..(((....)))..))))))......((((....)))) ( -35.50)
>DroSec_CAF1 29436 114 + 1
GGGGUGGGCGGAUGGCAAGUGAUGGGAGGGAAAGGAAGCAGAACUUCCCACUUGUGACUGUGUUUGUGACUGUGCGUGUGUGAAAAUGUGUGUAUAAAAAAGAGACAACUGUCU
.(((..(((((.(.((((((...((((((....(....)....)))))))))))).)))))((((.(...((((((..(((....)))..))))))....).))))..)..))) ( -34.10)
>DroSim_CAF1 30285 114 + 1
GGGGUGGGCGGAUGGCAAGUGAUGGGAGGGAAAGGAAGCAGAACUUCCCACUUGUGACUGUGUUUGUGACUGUGCGUGUGUGAAAAUGUGUGUAUAAAAAAGAGACAACUGUCU
.(((..(((((.(.((((((...((((((....(....)....)))))))))))).)))))((((.(...((((((..(((....)))..))))))....).))))..)..))) ( -34.10)
>consensus
GGGGUGGGCGGAUGGCAAGUGAUGGGAGGGAAAGGAAGCAGAACUUCCCACUUGUGACUGUGUUUGUGACUGUGCGUGUGUGAAAAUGUGUGUAUAAAAAAGAGACAACUGUCU
(..(..((((.((.((((((...((((((....(....)....)))))))))))).).).))))..)..)((((((..(((....)))..))))))......((((....)))) (-31.15 = -32.43 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:11 2006