Locus 63

Sequence ID 4_DroMel_CAF1
Location 518,113 – 518,233
Length 120
Max. P 0.524088
window96

overview

Window 6

Location 518,113 – 518,233
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 91.39
Mean single sequence MFE -23.10
Consensus MFE -17.62
Energy contribution -18.75
Covariance contribution 1.12
Combinations/Pair 1.07
Mean z-score -1.59
Structure conservation index 0.76
SVM decision value -0.02
SVM RNA-class probability 0.524088
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 518113 120 + 1281640
UCACCUGUAUUUACUUAAAAUAUCCAAACACAAAAACCUUUGCAUACUGCAUAUCUCAGUUUGUAUGUUGACAAGGGAAUGUGUACCCAACACGGUAAUUGUACAUAAGCAUGUGAUAAA
((((.(((............................((((((((....((((((........)))))))).))))))..(((((((((.....)).....))))))).))).)))).... ( -22.70)
>DroSec_CAF1 24094 120 + 1
UCACCUGUAUUUACUUAAAAUAUCCAAACACAAAAGCCUUUGCAUACUGCAUAUCUCAGUUUGUAUGCUUAGAAGGGAAUGUGUACCCAACACGGUAAUUGUACAUAAGCAUGUGAUAAA
((((.(((............................(((((((((((.((........))..))))))...)))))...(((((((((.....)).....))))))).))).)))).... ( -24.10)
>DroSim_CAF1 24048 120 + 1
UCACCUGUAUUUACUUAAAAUAUCCAAACACAAAAGCCUUUGCAUACUGCAUAUCUCAGUUUGUAUGUUUACAAGGGAAUGUGUACCCAACACGGUAAUUGUACAUAAGCAUGUGAUAAA
((((.(((...................(((((....(((((((((((.((........))..)))))....))))))..)))))(((......)))............))).)))).... ( -22.60)
>DroYak_CAF1 30818 112 + 1
UCACCUGUAUUUACUUAAAAUAUCUAAACACAAAAGCGUUUGCAUACUGCAUAUCUGAGUUUGUAUGUUU--------AUGUGUACCCAACGCGGUAAUUCUACAUAGACAUAAGAUAAA
....................(((((....(((((..((..(((.....)))....))..)))))((((((--------(((((((((......))))....))))))))))).))))).. ( -23.00)
>consensus
UCACCUGUAUUUACUUAAAAUAUCCAAACACAAAAGCCUUUGCAUACUGCAUAUCUCAGUUUGUAUGUUUACAAGGGAAUGUGUACCCAACACGGUAAUUGUACAUAAGCAUGUGAUAAA
((((.(((...................(((((....((((.((((((.((........))..))))))....))))...)))))(((......)))............))).)))).... (-17.62 = -18.75 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:06 2006