Locus 62

Sequence ID 4_DroMel_CAF1
Location 517,921 – 518,038
Length 117
Max. P 0.547085
window95

overview

Window 5

Location 517,921 – 518,038
Length 117
Sequences 4
Columns 117
Reading direction forward
Mean pairwise identity 87.32
Mean single sequence MFE -25.40
Consensus MFE -17.05
Energy contribution -19.80
Covariance contribution 2.75
Combinations/Pair 1.06
Mean z-score -1.63
Structure conservation index 0.67
SVM decision value 0.03
SVM RNA-class probability 0.547085
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 517921 117 + 1281640
ACACGGUUGUUGGGUUUUGGGUUUAAUACAGAAAAUACAAAUGCAAUAACAUGCAUAGGCAUACCGAUGAAUAAUUUAAAUAUUGAUCUGUUCGACUUUAAGUACAAGAACCCGUGA
.(((((((.(((..(((..((((....(((((.((((...(((((......))))).((....))...............))))..)))))..))))..)))..))).)).))))). ( -27.40)
>DroSec_CAF1 23901 117 + 1
ACAUGGUUUUUGGGUUUCGGGUUUAUGACAGAAAAUACAAAUGCAAUGACAUGCAUAGGCAUACCGAUGAAUAAUUUAAAUAUUGAUCUGUUCGACUUUAAAUACAAGAACCCGUGA
.(((((((((((..(((..((((...((((((.((((...(((((......))))).((....))...............))))..)))))).))))..)))..)))))).))))). ( -28.50)
>DroSim_CAF1 23855 117 + 1
ACAUGGUUUUUGGGUUUCGGGUUUAUGACAGAAAAUACAAAUGCACUGACAUGCAUAGGCAUACCGAUGAAUAAUUUAAAUAUUGAUCUGUUCGACUUUAAAUACAAGAACCCGUGA
.(((((((((((..(((..((((...((((((.((((...(((((......))))).((....))...............))))..)))))).))))..)))..)))))).))))). ( -28.30)
>DroYak_CAF1 30636 106 + 1
ACAUGGUUUAUGG-------GAUUAAUACAGCAAAUACGAAUGCA----CGUGCAAUGGCAUAACUAUGAAUAAUUUAAAUAUUGAUCUGUUCGACUUCAAAUACAAGAACCCCUGA
....(((((.(((-------((((((((..(((........))).----.((((....))))..................)))))))))....(....).....)).)))))..... ( -17.40)
>consensus
ACAUGGUUUUUGGGUUUCGGGUUUAAGACAGAAAAUACAAAUGCAAUGACAUGCAUAGGCAUACCGAUGAAUAAUUUAAAUAUUGAUCUGUUCGACUUUAAAUACAAGAACCCGUGA
.(((((((((((..(((..((((...((((((.((((...(((((......)))))...(((....)))...........))))..)))))).))))..)))..)))))).))))). (-17.05 = -19.80 +   2.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:04 2006