Locus 61

Sequence ID 4_DroMel_CAF1
Location 514,431 – 514,530
Length 99
Max. P 0.640257
window93 window94

overview

Window 3

Location 514,431 – 514,530
Length 99
Sequences 3
Columns 99
Reading direction forward
Mean pairwise identity 97.98
Mean single sequence MFE -21.53
Consensus MFE -20.89
Energy contribution -20.67
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -1.59
Structure conservation index 0.97
SVM decision value 0.22
SVM RNA-class probability 0.640257
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 514431 99 + 1281640
AAUAACAAAUAACGCCCGCAUUUGUUUUCGCAUCCAUUUGGGAUAAUGAAGCGCAACCCAUUGAAUUUUAAUUUGGCACUUAACAAAUUCAAUGGGAAA
................(((.((..((.((.((......)).)).))..)))))...(((((((((((((((........)))..))))))))))))... ( -23.20)
>DroSec_CAF1 20907 99 + 1
AAUAACAAAUAACGCCCGCAUUUGUUUUCGCAUCCAUUUGGGAUAAUGAAGCGCAACCCAUUGAAUUUUAAUUUGGCACUUGACGACUUCAAUGGGAAA
................(((.((..((.((.((......)).)).))..)))))...(((((((((..((((........))))....)))))))))... ( -20.70)
>DroSim_CAF1 20901 99 + 1
AAUAACAAAUAACGCCCGCAUUUGUUUUCGCAUCCAUUUGGGAUAAUGAAGCGCAACCCAUUGAAUUUUAAUUUGGCACUUGACGACUUCAAUGGGAAA
................(((.((..((.((.((......)).)).))..)))))...(((((((((..((((........))))....)))))))))... ( -20.70)
>consensus
AAUAACAAAUAACGCCCGCAUUUGUUUUCGCAUCCAUUUGGGAUAAUGAAGCGCAACCCAUUGAAUUUUAAUUUGGCACUUGACGACUUCAAUGGGAAA
................(((.((..((.((.((......)).)).))..)))))...(((((((((..((((........))))....)))))))))... (-20.89 = -20.67 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 4

Location 514,431 – 514,530
Length 99
Sequences 3
Columns 99
Reading direction reverse
Mean pairwise identity 97.98
Mean single sequence MFE -24.03
Consensus MFE -22.58
Energy contribution -22.58
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.94
SVM decision value 0.09
SVM RNA-class probability 0.580975
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 514431 99 - 1281640
UUUCCCAUUGAAUUUGUUAAGUGCCAAAUUAAAAUUCAAUGGGUUGCGCUUCAUUAUCCCAAAUGGAUGCGAAAACAAAUGCGGGCGUUAUUUGUUAUU
...((((((((((((................))))))))))))(((((.((((((......))))))))))).(((((((((....).))))))))... ( -26.39)
>DroSec_CAF1 20907 99 - 1
UUUCCCAUUGAAGUCGUCAAGUGCCAAAUUAAAAUUCAAUGGGUUGCGCUUCAUUAUCCCAAAUGGAUGCGAAAACAAAUGCGGGCGUUAUUUGUUAUU
...(((((((((......................)))))))))(((((.((((((......))))))))))).(((((((((....).))))))))... ( -22.85)
>DroSim_CAF1 20901 99 - 1
UUUCCCAUUGAAGUCGUCAAGUGCCAAAUUAAAAUUCAAUGGGUUGCGCUUCAUUAUCCCAAAUGGAUGCGAAAACAAAUGCGGGCGUUAUUUGUUAUU
...(((((((((......................)))))))))(((((.((((((......))))))))))).(((((((((....).))))))))... ( -22.85)
>consensus
UUUCCCAUUGAAGUCGUCAAGUGCCAAAUUAAAAUUCAAUGGGUUGCGCUUCAUUAUCCCAAAUGGAUGCGAAAACAAAUGCGGGCGUUAUUUGUUAUU
...(((((((((......................)))))))))(((((.((((((......))))))))))).(((((((((....).))))))))... (-22.58 = -22.58 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:00 2006