Locus 59

Sequence ID 4_DroMel_CAF1
Location 509,639 – 509,758
Length 119
Max. P 0.884573
window89

overview

Window 9

Location 509,639 – 509,758
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 95.40
Mean single sequence MFE -35.67
Consensus MFE -29.83
Energy contribution -30.64
Covariance contribution 0.81
Combinations/Pair 1.04
Mean z-score -2.62
Structure conservation index 0.84
SVM decision value 0.93
SVM RNA-class probability 0.884573
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 509639 119 - 1281640
AUUCCCGAACCAACGUUGCGGACCCCCGUUACGAGCGCACAAAAAAAACUACCCCGACAAAAUUAUAAUGAAGUUGGUGGUGGUGCAGAGGAAAG-CCAAGUGUGCGUCGAAAACAGGGU
...(((.......(((.((((....)))).))).((((((.......(((((((((((..............))))).)))))).....((....-))..))))))..........))). ( -38.54)
>DroSec_CAF1 15981 119 - 1
AUUCCCGAACCAACGUUGCGGACCACCGUUACGAGCGCACAAAAAAAACUACCCCGACAAAAUUAUAAUGAAGUUGGUGGUGGUGCAGAGGAAAG-CAAAGUGUGCGUCGAAAACAGGGU
...(((.......(((.((((....)))).))).((((((.......(((((((((((..............))))).))))))((........)-)...))))))..........))). ( -38.24)
>DroSim_CAF1 16064 119 - 1
AUUCCCGAACCAACGUUGCGGACCACCGUUACGAGCGCACAAAAAAAACUACCCCGACAAAAUUAUAAUGAAGUUGGUGGUGGUGCAGAGGAAAG-CAAAGUGUGCGUCGAAAACAGGGU
...(((.......(((.((((....)))).))).((((((.......(((((((((((..............))))).))))))((........)-)...))))))..........))). ( -38.24)
>DroYak_CAF1 21527 120 - 1
AUUCCCGAACCAACGUUGCAAACAACCGUCAUAAGCGAACAAAAAAAACUACCCCGACAAAAUUAUAAUGAAGUUGGUGGUGGUGCAGAGGAAAGGCAAAGUGUGCGUUGAAAACAGGGU
...(((....((((.((((.......(((.....)))..........(((((((((((..............))))).)))))))))).......(((.....)))))))......))). ( -27.64)
>consensus
AUUCCCGAACCAACGUUGCGGACCACCGUUACGAGCGCACAAAAAAAACUACCCCGACAAAAUUAUAAUGAAGUUGGUGGUGGUGCAGAGGAAAG_CAAAGUGUGCGUCGAAAACAGGGU
...(((.......(((.((((....)))).))).(((((((......(((((((((((..............))))).)))))).................)))))))........))). (-29.83 = -30.64 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:52 2006