Locus 58

Sequence ID 4_DroMel_CAF1
Location 509,486 – 509,602
Length 116
Max. P 0.950971
window88

overview

Window 8

Location 509,486 – 509,602
Length 116
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 91.49
Mean single sequence MFE -43.25
Consensus MFE -41.14
Energy contribution -41.08
Covariance contribution -0.06
Combinations/Pair 1.11
Mean z-score -1.86
Structure conservation index 0.95
SVM decision value 1.41
SVM RNA-class probability 0.950971
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 509486 116 - 1281640
----AGGUCCUGGGCAAGGGACCAAGAGAUUCGGGUGGAGUGGGCUUUCUUUGCCACCUUUCUUCCGCCUGCUUGUGCAGUUGGAACACCACCACCCUGGGUUAAAAUUAAAAAAAGCGA
----.((((((......))))))....(((((((((((.((((((.......))).......(((((.((((....)))).))))))))..)))))).)))))................. ( -43.50)
>DroSec_CAF1 15822 119 - 1
UCCGGGGUCCUGGGCACGGGACCAAGAGAAUCGGGUGGAGUGGGCUUUCUUUGCCACCUUCCUUCCGCCUGCUUGUGCAGUUGGAACACCACCACCCUGGGUUAAAAUUAAA-AAAGCGA
((((.(((((((....))))))).........((((((.((((((.......))).......(((((.((((....)))).))))))))..))))))))))...........-....... ( -45.90)
>DroSim_CAF1 15905 119 - 1
UCCGGGGUCCUGGGCACGGGACCAAGAGAAUCGGGUGGAGUGGGCUUUCUUUGCCACCUUCCUUCCGCCUGCUUGUGCAGUUGGAACACCACCACCCUGGGUUAAAAUUAAA-AAAGCGA
((((.(((((((....))))))).........((((((.((((((.......))).......(((((.((((....)))).))))))))..))))))))))...........-....... ( -45.90)
>DroYak_CAF1 21370 118 - 1
ACCUGGGUUCUGGGCACGGGACCAAGAGAAUCGGGCGGAGUGGGCUUUCCUUGCCACCUUCCUUUCGUCUGCUUGUGCAGUCGGAACACCACCACCCUGAA-AAAAAUUAAA-AAAGCGA
..((.(((((((....))))))).))....(((((.(..((((((.......))).......(((((.((((....)))).)))))...)))..)))))).-..........-....... ( -37.70)
>consensus
UCCGGGGUCCUGGGCACGGGACCAAGAGAAUCGGGUGGAGUGGGCUUUCUUUGCCACCUUCCUUCCGCCUGCUUGUGCAGUUGGAACACCACCACCCUGGGUUAAAAUUAAA_AAAGCGA
.....(((((((....))))))).........((((((.((((((.......))).......(((((.((((....)))).))))))))..))))))....................... (-41.14 = -41.08 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:50 2006