| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 507,430 – 507,550 |
| Length | 120 |
| Max. P | 0.933015 |
| Location | 507,430 – 507,550 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.83 |
| Mean single sequence MFE | -28.11 |
| Consensus MFE | -19.16 |
| Energy contribution | -19.47 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.68 |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.933015 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 507430 120 - 1281640 CCGGUCACGAAAACAGUCCCUGAAUCAUAGAUUAGGAGACAUACAUAUGUUUUUUCCAACAUAGAAGACCUUCUUCUUGAAAUCUUUGAUUUAGGAUUUCUUUAGGGACCAGAGUCACAG ..((((...(((..(((((.(((((((.(((((.((((((((....)))))...)))..((.(((((.....))))))).))))).))))))))))))..)))...)))).......... ( -34.10) >DroSec_CAF1 13731 93 - 1 GCGGUCACGAAAACAGUCCCUGAAGCAUAGAUUCGGAGACAUACUU--------------------------AUUCUUGACAUCUUUGAUUCAGGAUUU-UUUACUGACCAGAGUCACAG ..(((((..((((.(((((.((((.((.(((((((.(((.......--------------------------..)))))).)))).)).))))))))))-)))..))))).......... ( -22.60) >DroSim_CAF1 13732 119 - 1 GCGGUCACGAAAACAGUCCCUGAAGCAUAGAUUCGGAGACAUACUUAUAUUUUUUCCAAUAUAGAGGACCUUAUUCUUGACAUCUUUGAUUCAGGAUUU-UUUAAUGACCAGAGUCACAG ..(((((..((((.(((((.((((.((.(((((((((((.............)))))......(((((.....))))))).)))).)).))))))))))-)))..))))).......... ( -27.62) >consensus GCGGUCACGAAAACAGUCCCUGAAGCAUAGAUUCGGAGACAUACUUAU_UUUUUUCCAA_AUAGA_GACCUUAUUCUUGACAUCUUUGAUUCAGGAUUU_UUUAAUGACCAGAGUCACAG ..((((...(((..(((((.((((.((.((((..(....).....((((((......))))))..................)))).)).)))))))))..)))...)))).......... (-19.16 = -19.47 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:49 2006