Locus 54

Sequence ID 4_DroMel_CAF1
Location 471,654 – 471,774
Length 120
Max. P 0.795289
window81

overview

Window 1

Location 471,654 – 471,774
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 98.33
Mean single sequence MFE -27.49
Consensus MFE -26.37
Energy contribution -26.18
Covariance contribution -0.19
Combinations/Pair 1.03
Mean z-score -1.98
Structure conservation index 0.96
SVM decision value 0.60
SVM RNA-class probability 0.795289
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 471654 120 - 1281640
UUUGUGCAGGGAUCUACCUAUAAACAUCGGCUUACCGAAGUUAGGUUCCUUCACUGUUUUUAUAUAACACCUUUUAAAAUCUGUGCGAAAAGAUUAGCAUCAUUUUCGUCAUAAAACGGA
...(((.(((((((((.......((.((((....)))).))))))))))).)))((((.......))))..........(((((((((((((((....))).)))))))......))))) ( -27.01)
>DroSec_CAF1 4692 120 - 1
UUUGUGCAGGGAUCUAUCUAUAAACAUCGGCUUACCGAAGUUAGGUUCCUUCACUGAUUUUAUAUAACACCUUUUAAAAUCUGUGCGAAAAGAUUAGCAUCAUUUUCGUCAUAAAACGGA
...(((.(((((((((.((.......((((....)))))).))))))))).))).(((((((............)))))))(((((((((((((....))).)))))).))))....... ( -29.41)
>DroEre_CAF1 4100 120 - 1
UUUGUGCAGGGAUCUAUCUAUAAACAUCGGCUUACCGAAGUUAGGUUCCUUCACUGUUUUUAUAUAACACCUUUUAAAAUCUGUGCGAAAAGAUUAGCAUCAUUUUCGUCAUAAAAUGGA
...(((.(((((((((.((.......((((....)))))).))))))))).)))((((.......))))............(((((((((((((....))).)))))).))))....... ( -26.51)
>DroYak_CAF1 4338 120 - 1
UUUGUGCAGGGAUCUAUCUAUAAACAUCGGCUUACCGAAGUUAGGUUCCUUCACUGUUUUUUUAUAACACCUUUUAAAAUCUGUGCGAAAAGAUUAGCAUCAUUUUCGUCAUAAAACGGA
...(((.(((((((((.((.......((((....)))))).))))))))).)))((((.......))))..........(((((((((((((((....))).)))))))......))))) ( -27.01)
>consensus
UUUGUGCAGGGAUCUAUCUAUAAACAUCGGCUUACCGAAGUUAGGUUCCUUCACUGUUUUUAUAUAACACCUUUUAAAAUCUGUGCGAAAAGAUUAGCAUCAUUUUCGUCAUAAAACGGA
...(((.(((((((((.......((.((((....)))).))))))))))).))).........................(((((((((((((((....))).)))))))......))))) (-26.37 = -26.18 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:40 2006