Locus 52

Sequence ID 4_DroMel_CAF1
Location 459,054 – 459,168
Length 114
Max. P 0.568413
window79

overview

Window 9

Location 459,054 – 459,168
Length 114
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 83.57
Mean single sequence MFE -37.52
Consensus MFE -27.43
Energy contribution -24.52
Covariance contribution -2.91
Combinations/Pair 1.54
Mean z-score -1.72
Structure conservation index 0.73
SVM decision value 0.07
SVM RNA-class probability 0.568413
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 459054 114 + 1281640
GAAGUUUUGGGUCAUCUUGUUUGGUGGCGGCCGAUUGCCACUAUUGGGAUUUAGCGGAAUAUUAUCGGAGCGCCGACUAAAUUGUACGGAUCCACCUUGCGCUGAUGCUUGACG
...(((.((((((.....(((((((((((.(((((..((.(((........))).))......)))))..)))).)))))))......))))))......((....))..))). ( -34.50)
>DroPse_CAF1 73695 114 + 1
AAAGUUCUGAGCCAUUUUAUUUGGUGGCGGGCGAUUACCACUGUUCGGAUUCAGUGGAAUAUUAUCAGAACGCCGAUUAAAUUGCACCUGACCACCAGGCGCAGAAUUUUGUCG
...(((((((((((((......)))))).........((((((........)))))).......)))))))..((((.(((((((.((((.....)))).)))..)))).)))) ( -40.50)
>DroSim_CAF1 51533 114 + 1
GAAGUUUUGAGUCAUCUUGUUUGGCGGCGGCCGAUUGCCGCUAUUGGGAUUUAGCGGAAUAUUAUCGGAGCGCGGAGUAAAUUGUACGGAUCCACCUUGUGCUGAUGUUUGACG
..........((((......(..((((((.(((((..((((((........))))))......)))))..)))((((((.....)))...)))......)))..)....)))). ( -32.20)
>DroEre_CAF1 84370 114 + 1
GAAGUUUUGAGUCAUCUUGCUAGGUGGCGGCUGAUUGCCGCUAUUCGGAUUUAGCGGGAUAUUAUCGGAGCGCCGACUAAAUUGUACGGAUCCUCCUUGUGCUGAAGAUUGACG
..((((((.(((.((((((((((((((((((.....))))))))......))))))))))......((((..(((((......)).)))...))))....))).)))))).... ( -40.10)
>DroYak_CAF1 91356 114 + 1
GAAGUUUUGAGUCAUCUUGUUUGGUGGCGGCCGAUUCCCGCUGUUGGGAUUUAGCGGAAUAUUAUCGGAGCGCCGACUAAAUUGUACAGAUCCUCCUUGUGCUGAAGUUUGACG
..........((((.((((((((((((((.(((((..((((((........))))))......)))))..)))).))))))).((((((.......))))))..)))..)))). ( -37.30)
>DroPer_CAF1 72825 114 + 1
AAAGUUCUGAGCCAUUUUAUUUGGUGGCGGGCGAUUACCACUGUUCGGAUUCAGUGGAAUAUUAUCAGAACGCCGAUUAAAUUGCACCUGACCACCAGGCGCAGAAUUUUGUCG
...(((((((((((((......)))))).........((((((........)))))).......)))))))..((((.(((((((.((((.....)))).)))..)))).)))) ( -40.50)
>consensus
GAAGUUUUGAGUCAUCUUGUUUGGUGGCGGCCGAUUGCCACUAUUCGGAUUUAGCGGAAUAUUAUCGGAGCGCCGACUAAAUUGUACGGAUCCACCUUGCGCUGAAGUUUGACG
...(((((((((((((......)))))).........((((((........)))))).......)))))))............((.(((.......))).))............ (-27.43 = -24.52 +  -2.91)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:37 2006