Locus 51

Sequence ID 4_DroMel_CAF1
Location 457,424 – 457,543
Length 119
Max. P 0.885329
window78

overview

Window 8

Location 457,424 – 457,543
Length 119
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 91.60
Mean single sequence MFE -24.80
Consensus MFE -21.16
Energy contribution -21.04
Covariance contribution -0.12
Combinations/Pair 1.18
Mean z-score -1.57
Structure conservation index 0.85
SVM decision value 0.94
SVM RNA-class probability 0.885329
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 457424 119 - 1281640
ACUUAGGUGUUUUUACAACGGAGAAAAUAAACUUUUGGAUAUGCAAAUGAUAACGUUGGAAACAACAUAAUUCAUUUGCAACUUUUAGAAGUCACGUCGAAGUUAAAUGUAGAAUCUGU
...(((((...((((((((...((......(((((((((..(((((((((....((((....)))).....)))))))))...)))))))))....))...))....))))))))))). ( -30.00)
>DroSec_CAF1 72934 119 - 1
ACGUAGGUGUUUUUACAACGGAGAAAAUAAACGUUUGGAUAUGCAAAUGAUAACGUUGGAAACAACAUAAUUUACUUGCAACUUUUAGAAGUAAUGUCGAAGUUAAAUGUAGAAUCUGU
..(((((....))))).(((((.........((((((......)))))).....((((....))))....(((((....((((((....(....)...))))))....))))).))))) ( -22.00)
>DroSim_CAF1 49896 119 - 1
ACGUAGGUGUUUUUACAACGGAGAAAAUAAACGCUUGGAUAUGCAAAUGAUAACGUUGGAAACAACAUAAUUUACUUGCAACUUUUAGAAGUAAUGUCGAAGUUAAAUGUAGAAUCUGU
..(((((....))))).(((((..........((((.(((((((((.(((....((((....)))).....))).)))).((((....)))).))))).))))...........))))) ( -25.60)
>DroEre_CAF1 82737 119 - 1
CCGUAGAUGUUUUUACAACGGAGAAAAUAAACAUUUGGAUAUGCAAAUGAUAACGUUGAAAACAGCAUAUUUCAUUUUCAACUUUUAGAAGUCACGUCUAAGUUAAAUGUAGAAUCUGU
..(((((....))))).(((((.........((((((......)))))).((((((((((((............))))))))..(((((.......))))))))).........))))) ( -20.60)
>DroYak_CAF1 89723 119 - 1
CCGUAGAUGUUUUUACAACGGAGAAAAUUACCAUUUGGAUAUGCAAAUGAUAACGUUGGACACAACAUAUUUUAUUUGCAACUUGUAAAAGUCACAUCUAAGUUAAAUGUAGAAUCUGU
...(((((((((((((((.(..........((....))...(((((((((....((((....)))).....))))))))).)))))))))...)))))))................... ( -25.80)
>consensus
ACGUAGGUGUUUUUACAACGGAGAAAAUAAACAUUUGGAUAUGCAAAUGAUAACGUUGGAAACAACAUAAUUUAUUUGCAACUUUUAGAAGUCACGUCGAAGUUAAAUGUAGAAUCUGU
..(((((....))))).(((((..........((((.(((.(((((((((....((((....)))).....)))))))))((((....))))...))).))))...........))))) (-21.16 = -21.04 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:35 2006