| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 87,503 – 87,596 |
| Length | 93 |
| Max. P | 0.931910 |
| Location | 87,503 – 87,596 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 96.24 |
| Mean single sequence MFE | -23.56 |
| Consensus MFE | -22.00 |
| Energy contribution | -22.12 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.93 |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.931910 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 87503 93 + 1281640 ACAGAGCACAUUACGGUCUUGAACAUCUUCUGCAAUAAGACGGAACUUGCGAAAAGAACGUUCUGGAUCAAUAUCCUUUUGCAAGUCUGCUAA ....((((.....(.((((((..((.....))...)))))).).(((((((((((((....)))((((....)))))))))))))).)))).. ( -22.10) >DroSec_CAF1 32775 93 + 1 ACAGAGCACAUUUCGGUCUUGAACAUCUUCUGCAAUAAGACGGAACUUGCGAAAAGAACGUUCUGGAUCAAUAUCCUUUUGCAAGUCCGCUAA ....(((........((((((..((.....))...))))))(((.((((((((((((....)))((((....))))))))))))))))))).. ( -24.60) >DroEre_CAF1 46991 93 + 1 ACAGAGCACAUUUCGGUCUUGAACAUCUUCAGCAAUAAGACGGAACUUGCGAAAAGAACGUUCUGGAUCAAUAUCUUUUUGCAAGUCCGCUAA ....(((........((((((..............))))))(((.((((((((((((................)))))))))))))))))).. ( -24.53) >DroYak_CAF1 53181 93 + 1 ACAAAGCACAUUUCGGUCUUGAACAUCCUCUGCAAUCAGACGGAACUUGCGAAAAGAACGUUCUGGAUCAAUAUCCUUUUGCAAGUCCGCUAA ....(((........((((.((.............))))))(((.((((((((((((....)))((((....))))))))))))))))))).. ( -23.02) >consensus ACAGAGCACAUUUCGGUCUUGAACAUCUUCUGCAAUAAGACGGAACUUGCGAAAAGAACGUUCUGGAUCAAUAUCCUUUUGCAAGUCCGCUAA ....(((........((((((..((.....))...))))))(((.((((((((((((....)))((((....))))))))))))))))))).. (-22.00 = -22.12 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:52 2006