| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 438,353 – 438,449 |
| Length | 96 |
| Max. P | 0.979793 |
| Location | 438,353 – 438,449 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 82.08 |
| Mean single sequence MFE | -7.51 |
| Consensus MFE | -7.78 |
| Energy contribution | -7.68 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.22 |
| Mean z-score | 0.19 |
| Structure conservation index | 1.04 |
| SVM decision value | 1.85 |
| SVM RNA-class probability | 0.979793 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 438353 96 + 1281640 AU-UUUCAAUUAAUACAUUUCCAAAAACGUUUUAGCCAAGUCCAAUCUAAUGCCCAUAAUCCGGUUAAUGCUGUCACUCCGCCAAUUUUCAAAAAUG ..-.........................((.((((((.........................)))))).)).......................... ( -4.91) >DroSec_CAF1 56251 85 + 1 UUUUUUCAAUUA------------AACCGUUUUAACCAAGUCCAAUCCUAAGCUCAUAAUUCGGUUAAGACUGUCAGUCCCCCAAUUUUCAAAAAUG ............------------.((.(((((((((.(((.................))).))))))))).))....................... ( -8.43) >DroSim_CAF1 35892 85 + 1 UUUUUUCAAUUA------------AACCGUUUUAGCCAAGUCCAAUCUUAAGCUCAUAAUUCGGUUAAGACUGUCAGUCCCCCAAUUUUCAAAAAUG ............------------(((((..(((((.(((......)))..)))...))..)))))..(((.....))).................. ( -9.20) >consensus UUUUUUCAAUUA____________AACCGUUUUAGCCAAGUCCAAUCUUAAGCUCAUAAUUCGGUUAAGACUGUCAGUCCCCCAAUUUUCAAAAAUG ............................(((((((((.........................))))))))).......................... ( -7.78 = -7.68 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:32 2006