Locus 47

Sequence ID 4_DroMel_CAF1
Location 419,010 – 419,119
Length 109
Max. P 0.540575
window73

overview

Window 3

Location 419,010 – 419,119
Length 109
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.81
Mean single sequence MFE -23.78
Consensus MFE -13.20
Energy contribution -13.12
Covariance contribution -0.08
Combinations/Pair 1.22
Mean z-score -2.04
Structure conservation index 0.55
SVM decision value 0.01
SVM RNA-class probability 0.540575
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 419010 109 - 1281640
---AUUCGCAUAA---CUUAUUUAAUGUAUACACAUAAGUAGGCGCAUGAGUAUAUGGACG-CA---AAAACAGAUGCGGAGCUGCAUUCUUUGUACUU-AGCAUUUAUUUAUGACAAAA
---....((((..---........)))).....((((((((((.((.((((((((.(((..-..---.......(((((....)))))))).)))))))-))).))))))))))...... ( -22.80)
>DroSec_CAF1 35902 113 - 1
AAUAUUCGUAUAA---CUUAUUUAAUGUAUACACAUAAGUAGGCGCAUGAGUAUAUGCACACCA---AAAACAGAUGCGGAGCUGCAUUCUUCGUACUU-AGCAAUUAUUUAUGACAAAA
.......(((((.---(.........)))))).(((((((((..((.(((((((((((((.((.---...........)).).))))).....))))))-)))..)))))))))...... ( -22.50)
>DroSim_CAF1 27417 112 - 1
AAUAUUCGUAUAA---CUUAUUUAAUGUAUACACAUAAGUAGGCGCAUGAGUAUAUGCACACCA---AAAACAGAUGCGG-GCUGCAUUCUUUGUACUU-AGCAAUUAUUUAUGACAAAA
.......(((((.---(.........)))))).(((((((((..((.((((((((((((..((.---...........))-..))))).....))))))-)))..)))))))))...... ( -23.70)
>DroEre_CAF1 45029 115 - 1
AAUAUUCGCAUAAUAACUUAUUUAAUUUAUACACAUAAGUAGGUGCA----CAUAUGCACACCAUC-AACAUAGAUGCGGAGCUGCAUUCUUUGUACUCCAACUAUUAUUUAUGCAAAAG
.......((((((..((((((.............))))))(((((((----....)))))..((((-......)))).((((.((((.....))))))))..)).....))))))..... ( -24.92)
>DroYak_CAF1 47616 112 - 1
AAUGUUUGUAUAAUACCGUAUACA---UUUACAUAUAAGUAGGUGCA----UAUAUGCACACCAACUAACGCAGAUGCGGAGCUGCAUUCUUUGUACUU-AGCAAUUAUUUAUGCAAAAA
....(((((((((....((((.((---(((((......))))))).)----))).(((...........(((....)))(((.((((.....)))))))-.))).....))))))))).. ( -25.00)
>consensus
AAUAUUCGUAUAA___CUUAUUUAAUGUAUACACAUAAGUAGGCGCAUGAGUAUAUGCACACCA___AAAACAGAUGCGGAGCUGCAUUCUUUGUACUU_AGCAAUUAUUUAUGACAAAA
.................................((((((((.((((((......))))............(((((((((....))))))...)))......))...))))))))...... (-13.20 = -13.12 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:27 2006