| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 405,538 – 405,659 |
| Length | 121 |
| Max. P | 0.679724 |
| Location | 405,538 – 405,637 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 84.97 |
| Mean single sequence MFE | -19.42 |
| Consensus MFE | -12.95 |
| Energy contribution | -13.82 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.633488 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 405538 99 + 1281640 -CCCCUCGCUCGAUUGCUUUUUAUU-UCAACUCCUACGUCCCUCCACUCUAUUCCGCAAGCACUCGACCCCUCCGUGCCAGUGGCAGGGACGCAAACUCAA -......((......))........-..........((((((((((((...........((((..((....)).)))).))))).)))))))......... ( -22.80) >DroSec_CAF1 22762 101 + 1 CCCCCUCGCUCGAUUGCUUUUUAUUUUCAACUCCUUCACCCCUCCACUCUCUUCCGCAAGCACUCGACCCCUCCGUGCCAGUGGCAGGGACGCAAACUCAA .......((((((.(((((......................................))))).))))....(((.((((...)))).))).))........ ( -18.46) >DroEre_CAF1 31007 94 + 1 CCCCUUCGUUCGCUUACUUUUUAUUUCCAAUUC------CCCUCCACUGUCUUCAGCAAGCAGUCGACCCCU-AGUGCCAGUGCCAGGGACGCAAACUCAA .......(((.((....................------...((.((((.(((....))))))).)).((((-.(((....))).))))..)).))).... ( -15.80) >DroYak_CAF1 32522 94 + 1 CCCCUUCGCUGGCUUGCUUUUUAUUUCCAAUUC------CCCUCCACUGUCUUUAGCAAGCACUCGACCCCU-AGUGCCAGUGCCAGGGACGCAAACUCAC .((((.((((((((((((...............------...............))))))((((.(....).-))))))))))..))))............ ( -20.61) >consensus CCCCCUCGCUCGAUUGCUUUUUAUUUCCAACUC______CCCUCCACUCUCUUCAGCAAGCACUCGACCCCU_AGUGCCAGUGCCAGGGACGCAAACUCAA .......((......))......................((((((((((..........((((...........)))))))))).))))............ (-12.95 = -13.82 + 0.88)
| Location | 405,562 – 405,659 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 87.95 |
| Mean single sequence MFE | -28.07 |
| Consensus MFE | -19.88 |
| Energy contribution | -21.12 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.679724 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 405562 97 + 1281640 -UCAACUCCUACGUCCCUCCACUCUAUUCCGCAAGCACUCGACCCCUCCGUGCCAGUGGCAGGGACGCAAACUCAAAGAGGGAUGGACUUAUGUCCGC -.....(((..((((((((((((...........((((..((....)).)))).))))).)))))))....(((...)))))).((((....)))).. ( -30.40) >DroSec_CAF1 22787 98 + 1 UUCAACUCCUUCACCCCUCCACUCUCUUCCGCAAGCACUCGACCCCUCCGUGCCAGUGGCAGGGACGCAAACUCAAAGAGGGAUGGACUUAUGUCCGC ..............(((((...(((((.((((..((((..((....)).))))..)))).))))).(......)...)))))..((((....)))).. ( -27.90) >DroEre_CAF1 31032 91 + 1 UCCAAUUC------CCCUCCACUGUCUUCAGCAAGCAGUCGACCCCU-AGUGCCAGUGCCAGGGACGCAAACUCAAAGAGGGAUGGACUUAUGUCCGC ........------(((((.((((.(((....)))))))....((((-.(((....))).)))).............)))))..((((....)))).. ( -25.40) >DroYak_CAF1 32547 91 + 1 UCCAAUUC------CCCUCCACUGUCUUUAGCAAGCACUCGACCCCU-AGUGCCAGUGCCAGGGACGCAAACUCACAGAGGGAUGGACUUAUGUCCGC ........------(((((....((((((.(((.(((((.(....).-)))))...))).))))))(........).)))))..((((....)))).. ( -28.60) >consensus UCCAACUC______CCCUCCACUCUCUUCAGCAAGCACUCGACCCCU_AGUGCCAGUGCCAGGGACGCAAACUCAAAGAGGGAUGGACUUAUGUCCGC ..............((((((((((..........((((...........)))))))))).))))..((...(((.....)))..((((....)))))) (-19.88 = -21.12 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:21 2006