| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 392,689 – 392,789 |
| Length | 100 |
| Max. P | 0.500000 |
| Location | 392,689 – 392,789 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 83.17 |
| Mean single sequence MFE | -19.44 |
| Consensus MFE | -14.14 |
| Energy contribution | -14.70 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.73 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 392689 100 - 1281640 AAU----AAUAUUCAAGUUUCGUUGUAAUCAUUUUGAAUUCAGCGUAAAGUCUAUUGGAAGCUGUAAAAACGGAAAAGCUAAUAGCAUACUUUACAUUUAACCC ...----..............((((...((.....))...))))((((((((((((((...((((....)))).....)))))))...)))))))......... ( -19.70) >DroSec_CAF1 10814 100 - 1 AAU----UAUAUUCAAGUUUCGUUGUAAUCAUUUUGAAUUCAGCGUAGAGUCUAUUGGAAGCUGUAAAAACGGCAAAGCUAAUAGCAUACUUUACAUUUAACCC ...----..............((((...((.....))...))))((((((((((((((..(((((....)))))....)))))))...)))))))......... ( -22.40) >DroEre_CAF1 16599 86 - 1 A-------ACAUUCAAGUAUCGUUGUAAUC-----------AGUGUAGAGUCUAUUGGAAGCUGUAAUAACGGCAAAGCUAAUUGCAAGCUUUACAUUGAAGCC .-------....................((-----------((((((((((.........(((((....)))))...((.....))..)))))))))))).... ( -22.10) >DroYak_CAF1 17172 104 - 1 AAUUAAUAAUAUUCAAGUAUCGUUUUAAUCAUUUUGAAUUCAGCGUAGAGUCUAUUGGAAGCUGUAAUAACGUCAAAGCUAAUAACAAGCUUUACAUUUAAGCC ..........(((((((...............))))))).....((((((..(.(((..((((.............))))..))).)..))))))......... ( -13.58) >consensus AAU____AAUAUUCAAGUAUCGUUGUAAUCAUUUUGAAUUCAGCGUAGAGUCUAUUGGAAGCUGUAAAAACGGCAAAGCUAAUAGCAAACUUUACAUUUAACCC ............................................((((((((((((((..(((((....)))))....)))))))...)))))))......... (-14.14 = -14.70 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:17 2006