| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 385,581 – 385,677 |
| Length | 96 |
| Max. P | 0.568946 |
| Location | 385,581 – 385,677 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 84.98 |
| Mean single sequence MFE | -23.04 |
| Consensus MFE | -18.22 |
| Energy contribution | -18.89 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.568946 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 385581 96 + 1281640 AGAUACUCUAUCUUCUUUUAUUCUCCCGAAGAUUGGUGGAGUGCUUCAUUUAGCACGCGAAUCUC-UUUUGUCUCGCAAGUCGAUGGUGA--------------ACAAAUC .....(.(((((..(((....((..((((...))))..))(((((......)))))((((..(..-....)..)))))))..))))).).--------------....... ( -23.20) >DroSec_CAF1 4454 111 + 1 UUAUACUCUAUCUUCUUAUAUUCUCCCGAAAAUUGGUUCAGUGCUUCAUUUAGCACGCGAAUCUUGUUUUAUCUCGCAAGUCGAUGGUGUACCAAUACUUAUAGACAAAUC ...(((.(((((................(((((.(((((.(((((......)))))..)))))..)))))....(....)..))))).))).................... ( -21.40) >DroSim_CAF1 2704 111 + 1 UGAUACUCUAUCUUCUUAUAUUCUCCCGAAGAUUGGUUCAGUGCUUCAUUUAGCACGCGAAUCUUGUUUUAUCUCGCAAGUCGAUGGUGUACCAAUACUUAUAGACAAUUC (((.(((..((((((............)))))).))))))(((((......)))))((((.............))))..(((...(((((....)))))....)))..... ( -24.52) >consensus UGAUACUCUAUCUUCUUAUAUUCUCCCGAAGAUUGGUUCAGUGCUUCAUUUAGCACGCGAAUCUUGUUUUAUCUCGCAAGUCGAUGGUGUACCAAUACUUAUAGACAAAUC ...(((.(((((..(((........((((...))))....(((((......)))))((((.............)))))))..))))).))).................... (-18.22 = -18.89 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:16 2006