Locus 40

Sequence ID 4_DroMel_CAF1
Location 383,671 – 383,781
Length 110
Max. P 0.799333
window64

overview

Window 4

Location 383,671 – 383,781
Length 110
Sequences 3
Columns 114
Reading direction reverse
Mean pairwise identity 91.07
Mean single sequence MFE -25.67
Consensus MFE -20.81
Energy contribution -20.59
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -2.56
Structure conservation index 0.81
SVM decision value 0.61
SVM RNA-class probability 0.799333
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 383671 110 - 1281640
UACAGUGUCCAAUGUGACAUUUUCCCAUGUCAUUGUUUCUGAAAAUAAUC----AGUUCAGUUAGUUCAGUUUAAAAUAAUUGAACUGAAGAAAUGUGCAUAAGCUUAGAUGCA
....(((..(...(((((((......))))))).((((((........((----((((((((((.............)))))))))))))))))))..)))..((......)). ( -25.82)
>DroSec_CAF1 2525 108 - 1
UACAGUGUCCAAUGUGACAUUGUCCCAUGUCAUUGUUUCUGAAAAUAAUCAUUCAGAUUAGUUAGUUCAGUUUAAAAUAAUUGAAUUGAA------UGCAUAAGCUUACAUGCA
.((((((((......))))))))...(((.((((...((((((........)))))).....((((((((((......))))))))))))------)))))..((......)). ( -25.60)
>DroSim_CAF1 774 108 - 1
UACAGUGUCCAAUGUGACAUUGUCCCAUGUCAUUGUUUCUGAAAAUAAUCAUUCAGAUUAGUUAGUUCAGUUUAAAAUAAUUGAAUUGAA------UGCAUAAGCUUACAUGCA
.((((((((......))))))))...(((.((((...((((((........)))))).....((((((((((......))))))))))))------)))))..((......)). ( -25.60)
>consensus
UACAGUGUCCAAUGUGACAUUGUCCCAUGUCAUUGUUUCUGAAAAUAAUCAUUCAGAUUAGUUAGUUCAGUUUAAAAUAAUUGAAUUGAA______UGCAUAAGCUUACAUGCA
..(((........(((((((......))))))).....)))....................(((((((((((......)))))))))))........((((........)))). (-20.81 = -20.59 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:14 2006