Locus 36

Sequence ID 4_DroMel_CAF1
Location 359,897 – 360,012
Length 115
Max. P 0.752628
window59

overview

Window 9

Location 359,897 – 360,012
Length 115
Sequences 3
Columns 116
Reading direction forward
Mean pairwise identity 77.23
Mean single sequence MFE -19.10
Consensus MFE -12.12
Energy contribution -13.23
Covariance contribution 1.11
Combinations/Pair 1.04
Mean z-score -1.72
Structure conservation index 0.63
SVM decision value 0.48
SVM RNA-class probability 0.752628
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 359897 115 + 1281640
AACAAUAAUGUGUUACUGAUAUGGUAUAUAUGUUAUAUAAAACCGAUAUAUCGACGUUAACACGAACGACUAGUUAC-UUUAUUAAAAAUAUAUACACCUUAUGGGUAAUUUUCCC
...........((((((.(((.(((.((((((((..(((((..(((....))).((((......)))).........-)))))....)))))))).))).))).))))))...... ( -20.80)
>DroSec_CAF1 7535 93 + 1
AAAAAUAAGGCGUUACUGAUAUGAUAUAUAUUUGGUAUAAAACCGAUAUAUCGACGUUCACCCGUACGGCUAGUUACCUUUAUUACAAAUAUA-----------------------
...(((((((.((.((((...(((((((...(((((.....)))))))))))).(((........)))..)))).))))))))).........----------------------- ( -18.10)
>DroSim_CAF1 4390 92 + 1
A-AAAUAAGGCGUUACUGAUAUGAUAUAUAUUUGGUAUAAAACCGAUAUAUCGACGUUCACACGUACGGCUAGUUACCUUUAUUACAAAUAUA-----------------------
.-.(((((((.((.((((...(((((((...(((((.....))))))))))))((((....)))).....)))).))))))))).........----------------------- ( -18.40)
>consensus
AAAAAUAAGGCGUUACUGAUAUGAUAUAUAUUUGGUAUAAAACCGAUAUAUCGACGUUCACACGUACGGCUAGUUACCUUUAUUACAAAUAUA_______________________
...(((((((.((.((((...((((((((....(((.....))).)))))))).(((........)))..)))).)))))))))................................ (-12.12 = -13.23 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:08 2006