| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 300,543 – 300,658 |
| Length | 115 |
| Max. P | 0.605480 |
| Location | 300,543 – 300,658 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.25 |
| Mean single sequence MFE | -22.45 |
| Consensus MFE | -15.76 |
| Energy contribution | -15.23 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.605480 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 300543 115 - 1281640 UAAGAGAAUGUUCUUUGGAUGUUAUGGUGAUGGAUUUUGAUAACAUUGGAAGGAACGAGUUAAUAGGACGAAUACUAUUAGCUGGUAAAAAUGAAAAUAACAUCU-CUA---CAGCUUA- ..(((((...((((((.((((((((.(..........).)))))))).))))))((.(((((((((........))))))))).))................)))-)).---.......- ( -30.90) >DroPse_CAF1 11785 111 - 1 UAAGAGAAUGCUCUUUGGAUGUUAUGGUGAUGGAUUUUGAUAACAUUGGGCGAAAUGAGUUAAUAGGACGAAUACUAUUAGCCGGUAAGAA--------AAAUAU-AUAGAACAGCAGAA ........(((((.((.((((((((.(..........).)))))))).)).))..((.((((((((........)))))))))).......--------......-........)))... ( -18.60) >DroGri_CAF1 2992 110 - 1 UACGAGAAUGUUCUCUGGAUGUCAUGGUUAUGGAUUUCGAUAAUAUUGGACGAAACGAGCUGAUCGGUAGAAUAUUGUUGGCUGGUAAGCG--------AAAAUUGCUAU--GAAAAAUG ...((((....))))....((((...(((((.(....).)))))....))))..((.(((..(.(((((...))))))..))).)).((((--------(...)))))..--........ ( -22.70) >DroYak_CAF1 19816 115 - 1 UAAGAGAAUGUUCCUUGGAUGUUAUGGUGAUGGAUUUUGAUAACAUUGGAAGGAACGAGUUAAUAGGACGAAUAUUAUUAGCUGGUAAAAAUGAAAAUGAAAUAU-CUA---CAGCUCA- ...(((..((((((((.((((((((.(..........).)))))))).).)))))))(((((((((........)))))))))((((...((....))....)))-)..---...))).- ( -25.60) >DroMoj_CAF1 3841 105 - 1 UUCGCGAGUGCUCCUUGGACGUUAUGGUCAUGGACUUUGAUAAUAUUGGUAGAAACGAGUUGAUCGGCCGAAUACUGUUAGCUGGUAAAUA--------AAAGCU-------UAACAUUA (((((((..((((.((..((..(((.((((.......)))).)))...))...)).))))...)))..))))...((((((((........--------..))).-------)))))... ( -18.30) >DroPer_CAF1 12194 111 - 1 UAAGAGAAUGCUCUUUGGAUGUUAUGGUGAUGGAUUUUGAUAACAUUGGGCGAAAUGAGUUAAUAGGACGAAUACUAUUAGCCGGUAAGAA--------AAAUAU-AUAGAACAGCAGAA ........(((((.((.((((((((.(..........).)))))))).)).))..((.((((((((........)))))))))).......--------......-........)))... ( -18.60) >consensus UAAGAGAAUGCUCUUUGGAUGUUAUGGUGAUGGAUUUUGAUAACAUUGGAAGAAACGAGUUAAUAGGACGAAUACUAUUAGCUGGUAAAAA________AAAUAU_CUA___CAGCAGAA ...........((.((.((((((((.(..........).)))))))).)).)).((.(((((((((........))))))))).)).................................. (-15.76 = -15.23 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:05 2006