Locus 33

Sequence ID 4_DroMel_CAF1
Location 290,605 – 290,720
Length 115
Max. P 0.895264
window56

overview

Window 6

Location 290,605 – 290,720
Length 115
Sequences 3
Columns 115
Reading direction reverse
Mean pairwise identity 90.72
Mean single sequence MFE -25.71
Consensus MFE -22.77
Energy contribution -23.00
Covariance contribution 0.23
Combinations/Pair 1.08
Mean z-score -2.35
Structure conservation index 0.89
SVM decision value 0.99
SVM RNA-class probability 0.895264
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 290605 115 - 1281640
AGUCGUGACUAUGUGUCAUGAUGUAAACUAAAUAAGGUAAAAGUCAUUAAACUCUUCGGCUUGGGCAUGCCAAAAUAUUGAUUAGAGAAUCAGUAACUAAUAAGAGUACCUUAAA
.((((((((.....))))))))..........((((((............((((((.(((........)))....((((((((....))))))))......)))))))))))).. ( -29.90)
>DroSim_CAF1 2279 115 - 1
AAUCGUGACUAUGUGUCAUGAUGUAAACUAAAUAAGAUAAAAGUCAUUAAACUCUUCGGCUGGGGCAUGCCAAAAUAUGGAUUAGAGACUCAGUAACUAAUAAGAGUACCUUAAA
.((((((((.....)))))))).............(((....))).....((((((..((((((.....(((.....)))........)))))).......))))))........ ( -23.82)
>DroYak_CAF1 1629 115 - 1
AAUCGUGACUAUGUGUCAUGAUCUAAGUUCAAUAAAAGAAAAGUCAAUAAACUCUUUGGCUUGGGCAUGCCAAAAUGUUGAUUAUAAAAUCAGUAACUAAUAAGAGUACCUUAAA
.((((((((.....)))))))).(((((((.......)))..........((((((((((........))))))...((((((....))))))..........))))..)))).. ( -23.40)
>consensus
AAUCGUGACUAUGUGUCAUGAUGUAAACUAAAUAAGAUAAAAGUCAUUAAACUCUUCGGCUUGGGCAUGCCAAAAUAUUGAUUAGAGAAUCAGUAACUAAUAAGAGUACCUUAAA
.((((((((.....))))))))............................((((((.(((........)))....((((((((....))))))))......))))))........ (-22.77 = -23.00 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:04 2006