Locus 25

Sequence ID 4_DroMel_CAF1
Location 251,997 – 252,105
Length 108
Max. P 0.584258
window44

overview

Window 4

Location 251,997 – 252,105
Length 108
Sequences 3
Columns 111
Reading direction forward
Mean pairwise identity 88.59
Mean single sequence MFE -23.87
Consensus MFE -16.74
Energy contribution -17.30
Covariance contribution 0.56
Combinations/Pair 1.07
Mean z-score -2.40
Structure conservation index 0.70
SVM decision value 0.10
SVM RNA-class probability 0.584258
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 251997 108 + 1281640
ACAUUAUUUGAGUGUCUCUAUAUGUAUUUACAUUCAGCAUAAAAUGCGAUAUUUUAUAACUGAG--UGUGUUGCAUGUGCUUUAUUAUAAAUUACACCCUUAU-GUAAUAA
(((((.....)))))...((((((((..(((((((((.((((((((...))))))))..)))))--)))).))))))))...........((((((......)-))))).. ( -23.00)
>DroSec_CAF1 2954 111 + 1
ACUUUAUUUGAGUGUCUGUAUAUGUAUUUACAUUCAGCAUAAAAUGCUAUGUUUUAUAACUGUGUGUGUGUUGCAUAUGCUUUAUUAGAAAUUACAUACGUAAAACAUUUA
........(((((((..(((((((((..(((((.(((.(((((((.....)))))))..))).)))))...)))))))))...........((((....)))).))))))) ( -24.30)
>DroSim_CAF1 1849 110 + 1
ACUUUAU-UGAGUGUCUGUAUAUGUAUUUACAUUCAGCAUAAAAUGCUAUGUUUUAUAACUGUGUGUGUGUUGCAUAUGCUUUAUUAGAAAUUACAUACGUAAAACAUUUA
.......-(((((((..(((((((((..(((((.(((.(((((((.....)))))))..))).)))))...)))))))))...........((((....)))).))))))) ( -24.30)
>consensus
ACUUUAUUUGAGUGUCUGUAUAUGUAUUUACAUUCAGCAUAAAAUGCUAUGUUUUAUAACUGUGUGUGUGUUGCAUAUGCUUUAUUAGAAAUUACAUACGUAAAACAUUUA
..........((((...(((((((((..(((((.(((.(((((((.....)))))))..))).)))))...)))))))))..))))......................... (-16.74 = -17.30 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:49 2006