Locus 21

Sequence ID 4_DroMel_CAF1
Location 206,801 – 206,906
Length 105
Max. P 0.508731
window35

overview

Window 5

Location 206,801 – 206,906
Length 105
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 80.95
Mean single sequence MFE -30.48
Consensus MFE -17.75
Energy contribution -19.62
Covariance contribution 1.87
Combinations/Pair 1.27
Mean z-score -1.75
Structure conservation index 0.58
SVM decision value -0.05
SVM RNA-class probability 0.508731
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 206801 105 + 1281640
UUAAUCGCUCAAUCGCGUCUGCUGCGGAAAUUAGUAAAUUUCUAGCAGUAGUUAGAUAUUGAGUGCGUUCGCUAACUCGGGAUUCCGAUAUGGCCGUGUUGGGAA
.....((((((((..(..((((((((((((((....))))))).)))))))...)..))))))))..(((.(((((.(((....((.....))))).)))))))) ( -35.00)
>DroSec_CAF1 724 105 + 1
UUAAUCGCUCAAUCGCGUCUGCUGCGGAAAUUAGUAAAUUUCUAGCAGUGGUUAGAUAUUGCGUGCGUUCGCUAACUCGGGAUUCCGAUAUGGCCGUGUUGGCAA
.....(((...(((....(..(((((((((((....))))))).))))..)...)))...))).......((((((.(((....((.....))))).)))))).. ( -32.70)
>DroSim_CAF1 724 105 + 1
UUAAUCGCUCAAUCGCGUCUGCUGCGGAAAUUAGUAAAUUUCUAGCAGUGGUUAGAUAUUGCGUGCGUUCGCUAACUCGGGAUUCCGAUAUGGCCGUGUUGGCAA
.....(((...(((....(..(((((((((((....))))))).))))..)...)))...))).......((((((.(((....((.....))))).)))))).. ( -32.70)
>DroEre_CAF1 748 105 + 1
UCAAUCGCUCAAUAGCAUCUGCUGCGGAAAUUAGUAAAUUUCUAGCAGUAGUUAAAUAUUGAGUGCGUUCGCUAACUCGCGAUUCCGAAAUGACCGUGUUGCGAA
.....(((((((((....((((((((((((((....))))))).))))))).....)))))))))...........(((((((..((.......)).))))))). ( -34.70)
>DroAna_CAF1 64005 104 + 1
UUAAUCUCUCAAUAGCGUCCGCCGCAGAAAUAAGUAAAUUUCUGGCUGUUGUUAAAUAUUGAGUGCGUUCACUGACGUGUGAUUCCU-UAUUUCCAGAAUCAUGA
.......((((((((((.(.(((..((((((......))))))))).).)))....))))))).(((((....)))))(((((((..-........))))))).. ( -22.70)
>DroPer_CAF1 744 105 + 1
UCAAUCGUUCAAUGGCGUCCGCUGCAGAAAUUAGUAAAUUUCUGGCUGUUGUCAAAUACUGAGUGCGCUCGCUAACAUUGGACUCAGUGGAAGAAGAAUCAACAA
....((.(((..(((((.(.((..((((((((....)))))))))).).)))))..((((((((.((...........)).))))))))...)))))........ ( -25.10)
>consensus
UUAAUCGCUCAAUCGCGUCUGCUGCGGAAAUUAGUAAAUUUCUAGCAGUAGUUAAAUAUUGAGUGCGUUCGCUAACUCGGGAUUCCGAUAUGGCCGUGUUGGCAA
.....((((((((.....((((((((((((((....))))))).)))))))......)))))))).....((((..((((....))))..))))........... (-17.75 = -19.62 +   1.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:36 2006